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Information for unigene UN13960
| FASTA Sequence |
| Unigene ID: UN13960 | Length: 702 |
| SNP | TTTTTTGAGCTTAATATAGTTTCTTTTTGGTTGTTTGGTTTTGTTAGTTTGGCAAATAGAATAAGCATTTCCCAAGGCTTTAAAAT
CTCATCATATTCATTAAGCAACAAACCAAATAAGTACGAAACACATGTTCGTGTGTTTTCTGATTCAGATTACAGATGATGAAAGC
TCTTTAACATCATCAGCGACTTGCTCGTAGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCAGGTTTAAG
CATGACCAAGACACAACAAGTTGGTCGTTTTGTAGCACCGGCTTGGGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATAC
CAGCTTCCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTTCCAGCTATAACACATATTCCTTTCTGACCA
CGTCTTATGCTCTTAACCACTTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGAGCTTGAATGTCCTCTT
CTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATAGGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGCTT
CTGTATCGCTTCCCATGTTTTTAGCTAACAAGCAGCTGAGTGAAAAATGGCGGAAGAGTAGCGGAAACAAGTAGAGGTAGTGGTTT
AAGCGGTTGCTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002873346 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis lyrata subsp. lyrata] | 729 | 4e-075 |
| NP_196435 H/ACA ribonucleoprotein complex subunit 2-like protein [Arabidopsis thaliana] | 720 | 4e-074 |
| XP_002311407 predicted protein [Populus trichocarpa] | 616 | 5e-062 |
| XP_002512015 H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis] | 611 | 2e-061 |
| ACU13225 unknown [Glycine max] | 611 | 2e-061 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LEY9 H/ACA ribonucleoprotein complex subunit 2-like protein | 720 | 2e-075 |
| P32495 H/ACA ribonucleoprotein complex subunit 2 | 356 | 3e-033 |
| Q9P7H0 H/ACA ribonucleoprotein complex subunit 2 | 340 | 2e-031 |
| Q6P8C4 H/ACA ribonucleoprotein complex subunit 2-like protein | 314 | 2e-028 |
| Q6NTV9 H/ACA ribonucleoprotein complex subunit 2-like protein | 311 | 5e-028 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9PB40 Predicted protein | 616 | 3e-062 |
| B9RE76 H/ACA ribonucleoprotein complex subunit, putative | 611 | 1e-061 |
| C6SVF2 Putative uncharacterized protein | 611 | 1e-061 |
| A5AWM2 Putative uncharacterized protein | 589 | 4e-059 |
| B7FMB8 Putative uncharacterized protein | 580 | 5e-058 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G08180.1 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 721 | 1e-076 |
| AT4G22380.1 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 185 | 2e-014 |
| AT5G20160.1 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 185 | 2e-014 |
| AT4G12600.1 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 183 | 3e-014 |
| AT5G20160.2 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 127 | 1e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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