RadishBase

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Information for unigene UN13968

FASTA Sequence

Unigene ID: UN13968	Length: 1031	SSR	SNP
GGCTCTCTCTCTCTGTCTCGCTTCCTCTCTCTTTACGTTGGTTGGATCGAAAAAAATGGCGGAAGAATCGGAGAAACCTGTGCACA CGGAAGAGTCTCTGATGGAGAAGATAGCTGAGAAGATCCACGATCACGATTCATCATCGTCGTCGGACTCGGAGCACGAGAAACCG GAGTCTCCGTCGGCTTTGAAGGCGAAGATATACCGTTTGTTTGGTAGAGAGAAGCCTGTTCACAAGGTCCTCGGCGGTGGCTTGCC CGCTGATGTGTTCTTGTGGAGGGACAAAAAGCTCTCAGCCGCTGTTCTTGGTGTAGCGACTGCCATTTGGGTCCTGTTCGAGTTGG TTGAGTATCATTTGTTGAGTCTTGCGTGTCACATTTTGATATTCTCCCTCGCTGCCATGTTTTTGTGGTCTAATGCTCATGCCTTT ATGAAAAAGCCTCCACCTAAAATTCCTGAGATCCATGTTAAAGAGGAACACTTCCTTTTGATTGCTTCTGCACTGAGAAACGAGCT GAACCAGGCCTTCGTTATCCTAAGGAGCATTGCATTAGGAAGGGACTTGAAGAAGTTTCTCATGGTGGTTGTTGGGCTGTGGATAA TCTCGGTTGTGGGCAACTGGTTCAACTTCTTGACCCTTGTCTACATATGTTTTGTGGTGTTGCATACAGTACCGATGCTGTATGAG AAACATGAGGACAAGGTGGATCCAGTGGCGGAGAAGACGATAAATGAACTGAAGAAACATTACATGGTTTTCGATGAGAAAGTTCT TTCTAAGATCCCTCTTGCTTCCCTGAAAGCAAAGTTGGGTTAGACACTTTATAATGAAAGTAACTATCTCTCTATATCCCCTTTGA CGTTTTGCTTTGGTCTTGGGGCATTTCTGTTTATTTATATTTCTACACAAGACTCGATAAGAATCTGTTACTCTGTTTTTACTTGT GTTCATTTGTCTCATTTGGCGTGAGCATTTTTGGGCTATTTGATGTGAACGATGAGATTATATGATGATAAAAATGTTTATTTCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_191715 reticulon-like protein B6 [Arabidopsis thaliana]	1206	4e-130
XP_002876621 reticulon family protein [Arabidopsis lyrata subsp. lyrata]	1175	1e-126
NP_566065 reticulon-like protein B5 [Arabidopsis thaliana]	1099	9e-118
XP_002880222 reticulon family protein [Arabidopsis lyrata subsp. lyrata]	1095	3e-117
XP_002511930 conserved hypothetical protein [Ricinus communis]	898	2e-094

Swiss-Prot top hits (Blast detail)	Score	e value
Q6DBN4 Reticulon-like protein B6	1206	2e-131
O82352 Reticulon-like protein B5	1099	4e-119
Q9SUT9 Reticulon-like protein B2	771	4e-081
Q9SUR3 Reticulon-like protein B1	767	1e-080
Q9FFS0 Reticulon-like protein B4	757	2e-079

TrEMBL top hits (Blast detail)	Score	e value
B9RDZ1 Putative uncharacterized protein	898	1e-094
A9P8N5 Predicted protein	881	1e-092
A9PDM7 Putative uncharacterized protein	880	2e-092
B9RCJ7 Putative uncharacterized protein	871	2e-091
C6TH16 Putative uncharacterized protein	869	3e-091

Arabidopsis top hits (Blast detail)	Score	e value
AT3G61560.1 reticulon family protein (RTNLB6)	1207	1e-132
AT2G46170.1 reticulon family protein (RTNLB5)	1099	4e-120
AT4G11220.1 BTI2 (VIRB2-INTERACTING PROTEIN 2)	771	4e-082
AT4G23630.1 BTI1 (VIRB2-INTERACTING PROTEIN 1)	767	1e-081
AT5G41600.1 BTI3 (VIRB2-INTERACTING PROTEIN 3)	757	2e-080

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	1			6%


6	6			35%


10	4			24%


8	3			18%


7	3			18%

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