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Information for unigene UN13970

FASTA Sequence
Unigene ID: UN13970Length: 1379 SSR 
GGCTTCCACGGGCGTTGGAGACGATTTCTCCTAAACGGATCAAATTCTGAAAAGTCGGTAGAGAAGTTGCGGCTAATAGATCTCTT
TCTCTCTCTCTCTCGCTCGCTCGCTCAAAGTTGCAGGAAACCCTAACTTTAGGATCAAATTCGTTGCGATATGGAAGGAGGAGGTG
GTGGGTGGTATCGACCGCCGATGACGGGAGTGTGGTGGGACATCAACACGTGTCCGGTTCCCGCTGATGTTGACCCTCGTTATGTC
CGTCAGTGTATAGTATCTGGGTTGGAAAAGCAGATTCGTCGTCCGACTAAAACGATCATTTATGCCATGGGCAACCTAGAATACAT
ATCTAGTGACATCTTGGAAAAGATCGCTTCCTCTGGAATCATTCTTATTCACGCCCCTTGCGGTGCGAACCACTTAATTGGTTATC
TGCACGAATGGTGTGACGATGAGAAGCTTCAACCCCAACGTCCAGGTTCTAGGAACATAATGGTTATATCCGGTGATGGTTTTATG
AGTCTGTGTATTCAGGAATTTTCTGAATTCAACAAGTTTTGTGCATATCCAAAAGATGTTGGGCCATTAACAATCTTTGGCAATCA
ACGTGAGAAAGTGTTTGTCAAAGAGTTTGTGTGGGAAACTTTATGTAGTTACACCAAACCACCAAGTGGCGGCTATGCGCCGGTTG
TAGATAAACCTCTCTGCATTTGCCAAGTATGCGATGCTGTTTACCATACATGTAATGATTTCATCACTCATCTCAAGAGTCAACAA
CACAGAGAGGGGTTGTTTGGAATTGCGGCCCGTGGCGGCGATGGTAATATGCCTAGATTTTTTTGCACAGTTTGCAATTATCCCGC
CTACGACGAATTCAACATGTCCCTCCATAATGAAAGCAAAGATCATAAGCAGAAGCTGGCTGAGAAAGAAGAGCCTCCTCCTCAAG
CAGAGGATTGCGAGAGCAGGAAGAGAAATCCACAGGTGGATGGATCTCTTTAACGAGATAAACAAGAAGCAATCTCTTGAACGAGC
GCCCATGGAACTAGACTTAGTTGCCTAAGAGTGCGTGTGCATCGGTCTTTGTGTTAAAGAGTTTTACTAAATAATACTTATTTGTT
ATTATGGGTCTGGTTTCTTTCTTTGATTAAAATGAAAATCTTAATCTCGTTGCTTACATGCAAAACCACACTCCCTTTTGAAATGG
GTGAAATTAAGTAGAGCTTGAGAGAGTAGCCTTTTACTTGGGAAATTGTAACCTTTCTCCGGTTGAGTGCTAAACTCTGTTTTTTT
TTTTGCCTTCAACCATGTTCCTTATTCCGTATGAAACCTTTGTTGAATCGTGTTCCCTCATAGCGTGTGCCTCTGTCCGCTCATTA
TCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002892070 hypothetical protein ARALYDRAFT_887319 [Arabidopsis lyrata subsp. lyrata]1474e-007
BAB10380 unnamed protein product [Arabidopsis thaliana]1465e-007
NP_200926 Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]1412e-006
XP_002883443 hypothetical protein ARALYDRAFT_342502 [Arabidopsis lyrata subsp. lyrata]1384e-006
XP_002319460 predicted protein [Populus trichocarpa]1375e-006

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9FNP7 Emb|CAB71880.11463e-007
B9I6L8 Predicted protein (Fragment)1374e-006
B9RN60 Putative uncharacterized protein1365e-006
B9RFQ6 Nucleic acid binding protein, putative1348e-006

Arabidopsis top hits (Blast detail)Scoree value
AT5G61180.1 unknown protein1417e-009
AT3G62210.1 EDA32 (embryo sac development arrest 32)1301e-007
AT5G35640.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G01355.1); Has 85 Blast hits to 83 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1292e-007
AT3G62200.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: EDA32 (embryo sac development arrest 32) (TAIR:AT3G62210.1); Has 3380 Blast hits to 2820 proteins in 272 species: Archae - 0; Bacteria - 93; Metazoa - 1555; Fungi - 720; Plants - 473; Viruses - 42; Other Eukaryotes - 497 (source: NCBI BLink).1192e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
115  25%
 
810  50%
 
123  15%
 
71  5%
 
91  5%

Unigene MembersMember information