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Information for unigene UN13971
| FASTA Sequence |
| Unigene ID: UN13971 | Length: 1333 |
SSR | | GGCATTTGTTTAGGTTTCTTCTTTCTACCGACGAAAATGGGCGCTTTCAGGTTTCACCAGTACCAGGTTGTAGGAAGAGCTCTCCC
GACAGAGAAGGATGTCCAACCTAAGATTTACCGGATGAAGCTCTGGGCCACGAACGAGGTTCGTGCCAAGTCCAATTTCTGGTACT
TCTTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGTCAGATGCTCGCCATCAACGAGATATTTGAGAAGAACCCAACAACCATC
AAGAACTTCGGAATCTGGTTGAGGTACCAGAGCAGGACTGGATACCACAACATGTACAAGGAGTACCGCGACACCACCTTGAACGG
AGCCGTGGAACAGATGTACACCGAGATGGCGTCGAGACACCGTGTCAGGTTCCCTTGCATCCAGATCATCAAGACGGCGACTGTCC
CAGCCAAGCTTTGCAAGAGGGAGAGCACCAAGCAGTTCCACAACAGCAAAATCAAGTTCCCCTTGGTGTTCCGCAAGGTCAGACCA
CCAACCAGGAAGCTCAAGACCACCTACAAGGCCTCCAAGCCCAACTTGTTCATGTGAAAACAGTCTCTCTCTCTCTTTGATTGACC
GACGACTACTTCACATAAAACCTTTTTGTTTGGGTGATAGAGAATCTTGATGATGGAAGTTATCTGCTGTTTTGTTTCTCTTTTCA
AGGATATTTTTCTTTATCAACAACATTTTAGTATTATTCATGGAACTAAAAAAAAAAAAAAAAAAAAAGGCCGCAAGCAGTGGTAT
CAACGCAGAGTCCGGGGGGCATGTCATGTGTTCTATTGTCTCGGCTAAATAGCTTTTTCTTTTTCTCACAGTTCCTCTACGCGATA
AAATAGTGTATGATCCAACAAAAGAGATCAAGAGACTGAGAAATGGCGAATGGGTGCGAGATTTGCTGTGAAATAATGATCGCCAT
ACTCCTTCCTCCACTCGGGGTTTGTTTAAGGCATGGATGTTGCACTACGGAGTTCATGATATGTCTGATCCTAACGATTCTGGGAT
ACATACCGGGCATCATCTACGCACTCTATGCAATCGTTTACGTTGATCGTGATCAGTTCTTCGACGAGTACCGTCGTCCACTCTTC
TACGCTCAGTCACCTTAATTTAATTTACGCATTCTCTATTGTCTGTTTTTTTTTACAATGTTTTGGTTTTTGTTAATTTTATCTAT
TCCATCAATTACATTTTCATCATTCTTTCAATAATTTCAAGATTTAACACTTGTTTTTGTTACATGCTCACTTTCTTTCTGTATAC
TTTGTTTATTTGATCATAATCAAAAATAAAACAAAAATAATAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_180995 60S ribosomal protein L18a-2 [Arabidopsis thaliana] | 930 | 5e-098 |
| XP_002882886 60S ribosomal protein L18A [Arabidopsis lyrata subsp. lyrata] | 896 | 5e-094 |
| XP_002317384 predicted protein [Populus trichocarpa] | 890 | 2e-093 |
| ABK93213 unknown [Populus trichocarpa] | 887 | 5e-093 |
| NP_188078 60S ribosomal protein L18a-3 [Arabidopsis thaliana] | 883 | 2e-092 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P51418 60S ribosomal protein L18a-2 | 930 | 2e-099 |
| Q9LUD4 60S ribosomal protein L18a-3 | 883 | 7e-094 |
| Q943F3 60S ribosomal protein L18a | 863 | 1e-091 |
| Q9ATF5 60S ribosomal protein L18a | 859 | 4e-091 |
| Q54MK8 60S ribosomal protein L18a | 493 | 1e-048 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9PBF7 Predicted protein | 890 | 2e-093 |
| A9PA10 Putative uncharacterized protein | 887 | 4e-093 |
| C6SZ28 Putative uncharacterized protein | 882 | 1e-092 |
| Q8L7K0 60S ribosomal protein L18A, putative | 881 | 2e-092 |
| A9P8L2 Predicted protein | 880 | 2e-092 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G34480.1 60S ribosomal protein L18A (RPL18aB) | 931 | 2e-100 |
| AT3G14600.1 60S ribosomal protein L18A (RPL18aC) | 884 | 4e-095 |
| AT1G29965.1 60S ribosomal protein L18A (RPL18aA) | 882 | 7e-095 |
| AT1G29970.2 RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome | 872 | 1e-093 |
| AT4G28088.1 hydrophobic protein, putative / low temperature and salt responsive protein, putative | 418 | 5e-041 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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