RadishBase

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Information for unigene UN13979

FASTA Sequence

Unigene ID: UN13979	Length: 936		SNP
GGACCAAAAAAAAAGAAAAAAAAAATAAAGATCGTCGTCGACACCAACTTGCTGCTTTCTCCTTCGCACCGGAAGGATAGGACTAG AAAGAGTTTCACCTACTAGAAAACATGATGGGAGACTCTTCTTCGGGTTCAACCTCTTGGAGCAGTCAAAGGGATACTCAAGATGA TCGGATGATTGCTCTTATGTTATCTGAAGAGTACACTAACCTAGATGGTGCTGTTGCCAGACGCCTCTCCAATCTTGCTCCCGTTC CCCATGTTCCGCGAATAAATTCTTATATCCCCAACTTAAATGATGCCACCTTGGATCACCAACGCCTTCTTCAAAGGCTAAATGTT TATGGTTTGTGTGAGTTGAAGGTCTCTGGTGATGGAAACTGCCAGTTCCGAGCTCTTTCCGACCAGTTGTACCGATCTTCAGAGTA CCACAAGCAAGTTAGGGGAGAAGTTGTTAAACAGCTCAAGGACAATCGCACTATGTACGAAAGTTATGTTCCTATGAAATACAAAC GGTATTACAAGAAGATGGCAAAACTTGGAGAATGGGGAGACCATATTACCCTACAATCTGCGGCAGATAGGTTTGCAGCAAAGATA TGCCTGCTGACATCCTTCAGAGACACTTGTTTCATTGAAATCATGCCTCGAGACCAAGCACCTAAGCGTGAGTTATGGTTAAGTTT CTGGTCGGAGGTGCATTATAACTCTTTATACGACAATCGAGCGGTTCCAGTTCAGCAGAAGCCAAAGAGAAAACATTGGTTGTTCT AGAAAGCAAGTGTCAGGACAACATCTTCATATTATTATTTTGTATCAGTATTGTGCATAAGTCAACATTTTCAGACGCCGCAACTC TTCCTTTGTACTTGTGTATACACTTGAACTATAGCTTGAGCGATAACTTTTTTTAAATCGAACAGAACATTTACCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_186856 cysteine proteinase-like protein [Arabidopsis thaliana]	1021	9e-109
XP_002884244 predicted protein [Arabidopsis lyrata subsp. lyrata]	1021	9e-109
XP_002320400 predicted protein [Populus trichocarpa]	951	1e-100
XP_002278321 PREDICTED: hypothetical protein [Vitis vinifera]	917	1e-096
CBI21237 unnamed protein product [Vitis vinifera]	917	1e-096

Swiss-Prot top hits (Blast detail)	Score	e value
Q54P70 OTU domain-containing protein DDB_G0284757	143	3e-008
Q9D8C3 UDP-N-acetylglucosamine transferase subunit ALG13 homolog	140	6e-008
Q9NP73 UDP-N-acetylglucosamine transferase subunit ALG13 homolog	132	5e-007

TrEMBL top hits (Blast detail)	Score	e value
Q9SGA5 AT3G02070 protein	1021	6e-109
B9IA31 Predicted protein (Fragment)	951	8e-101
B4FCX0 Putative uncharacterized protein	867	4e-091
B6STB5 Cysteine-type peptidase	866	6e-091
B9FEZ7 Putative uncharacterized protein	864	1e-090

Arabidopsis top hits (Blast detail)	Score	e value
AT3G02070.1 OTU-like cysteine protease family protein	1022	3e-111
AT3G22260.1 OTU-like cysteine protease family protein	716	8e-076
AT3G22260.2 OTU-like cysteine protease family protein	704	2e-074
AT5G04250.1 OTU-like cysteine protease family protein	566	2e-058
AT5G04250.2 OTU-like cysteine protease family protein	566	2e-058

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	5			29%


6	5			29%


9	2			12%


11	5			29%

Unigene Members	Member information