RadishBase

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Information for unigene UN13989

FASTA Sequence

Unigene ID: UN13989	Length: 1185		SNP
ATAAATTGAAATTCTATGTACTTGGGGGGGGGGGAGATAGAAAAGAAAGTGAGCCATTAAAAACACCAGATCTCTCTCAAGTCCGT AGAAAGAAAAGGAAAAGAACTTAAATAAGTGAGCCACTAAAAAAACTCTCTCAACGTCTCAACAGTCAACACTGACACTAAAATCA ATGGGAGAGGAAGATAAGAAGAAAACAGAAGAGAAAATGGAGAAAAAAGCTGAAGAACCACAAGTGAAAAAAACTGATGATAAGAA AGAAGAAGAGAAGAAGAAAGAGCCTCAAGAGATTGTTCTTAAGATCTTTATGCATTGTGAAGGTTGTGCTAAAAAGATTCATAGAT GTCTTAAAGGCTTTGAAGGAGTGGAGGATGTAACAACTGATTGTAAAACTAGTAAAGTTGTGGTGAAAGGAGAGAAGGCAGATCCA CTAAAAGTGTTGCAGAGATTGCAAAGAAAGAGCCACCGTCCAGTGGAGCTCCTTTCTCCTATTCCAGAGCCTAAACCGGTTTCAGA TGAACCGGAGAAAAAGGAGGAGAAACCAAAACCTCAAGAGAAAAAAGAAGAGGTAGTGACAGTGGTACTGAGAGTTCACATGCATT GTGAAGCATGTGCCATGGAGATCCAAAAGAGAATCATGAGAATGAAAGGAGTGGAGTCTGTGGAACCAGATTTTAAAGCATCACAA GTGAGCGTGAAAGGAGTTTTTACACCGGAAAAGCTAGTTGAGTACGTTAACAAGAAAATCGGGAAGCATGCTGCGGTTGTCAAGCA AGATCCGTCCCCAAAACCGGAGAAAGAAAAAGAAACAAAAGACAAAGACAAAGACGAGAGGAAAAAGGAAGAGGAACAACCCAAAG AAAGTAAAGAGGCTAAGGAAGACGGTGGTGGAGTGGCCAAATCGGCGGCCGGAGATGGGGGTGCTGCAGCGGGGGAAGGTGACAAA GTGGTGGATTTAAAGAAGAATGAGTATCAATACCAGCCACCGAGGTATCCTGTGGAGATGTTTGCGTATCCACCACAGATATTCAG TGATGAGAACCCCAACGCTTGTACCATGATGTAGTAAATCGTTTGTTTAAGAAGTTACAACTTTTACTCTATTTATGTCGTTAAAT GGATTTATTTATTTATTTCAAGCTAATTAGATGATCATATTCTTGTCAGTGTTGTACATAAACAAGT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_001119410 Heavy-metal-associated domain--containing protein [Arabidopsis thaliana]	1285	3e-139
NP_199887 Heavy-metal-associated domain--containing protein [Arabidopsis thaliana]	1279	2e-138
XP_002865821 hypothetical protein ARALYDRAFT_495136 [Arabidopsis lyrata subsp. lyrata]	1273	8e-138
BAD94944 putative protein [Arabidopsis thaliana]	1271	1e-137
ACU18365 unknown [Glycine max]	857	1e-089

Swiss-Prot top hits (Blast detail)	Score	e value
P12036 Neurofilament heavy polypeptide	149	7e-009

TrEMBL top hits (Blast detail)	Score	e value
B3H4U8 Uncharacterized protein At5g50740.3	1285	2e-139
Q570V5 Putative uncharacterized protein At5g50740	1271	9e-138
B9RAC5 Metal ion binding protein, putative	901	7e-095
C6T963 Putative uncharacterized protein	857	9e-090
Q9C5D3 Putative uncharacterized protein At5g63530	855	2e-089

Arabidopsis top hits (Blast detail)	Score	e value
AT5G50740.3 metal ion binding	1286	9e-142
AT5G50740.1 metal ion binding	1282	3e-141
AT5G63530.1 ATFP3; metal ion binding / transition metal ion binding	856	7e-092
AT5G63530.2 ATFP3; metal ion binding / transition metal ion binding	856	7e-092
AT5G50740.2 metal ion binding	716	1e-075

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	5			42%


8	2			17%


10	1			8%


11	2			17%


9	2			17%

Unigene Members	Member information