 |
Information for unigene UN13999
| FASTA Sequence |
| Unigene ID: UN13999 | Length: 1223 |
| SNP | GGATCCCATGGCAAACAAGATGATTCACATAAACTAGTGTTCTCTCCACAAGCTATCTTCCACGTTTCATCAATCAATCTCAGCAA
CTCTTACATCTGATTAGCCAATTGTAGCCACCAGCAGATCTCCCCAGATTCATTTCTAAATCTATCAAAACCATGGCGATCAAGTC
CGACAACAAAACAAGAAGTACGAACACGGCGAGATCGCCATCTGGCAGAAGAGAGTCAACGACGAGGCGTGCCGCTCAAGACAAGA
CGACCCTAGAGCCAACTTCTGCAAAACCACTGATGACACCGATGACGTGTGGTACAAGAAAATGGAGGCGTGCATTACGCCTTATC
CCGAGACGAGCAGCTCTGACGAAGTGGCTGGAGGAGAGCTTCAGGTTTTCCCTGATAGGCTCAACGCGGTGCCGCCTAGGATCTCT
AGCGGTTCGGTCTCTGGCGTCACGGCTGATGCGTATGAGGATGATAACAGACAGTGGAAGAAACATGTGAAGGCTTACAAGAGGAT
CAATAGTTTGATTGATACTGGGAGGTACCGTAACATCATGGACATGAACGCAGGGTTTGGTGGGTTTGCTGCTGCTTTGGAGTCAC
AGAAGCTTTGGGTTATGAATGTTGTTCCAACCATTGCTGAGAAGAATAGGCTTGGAGTTGTGTATGAACGAGGACTCATTGGTATC
TACCATGACTGGTGCGAGGCTTTCTCGACATACCCGAGAACATATGACTTAATTCATGCGAACCATCTCTTCAGTCTTTACAAGAA
CAAGTGCAATGCGGAAGACATTCTTCTGGAGATGGATAGGATTCTGCGTCCAGAAGGAGCGGTTATAATCAGGGACGATGTTGACA
CATTGATGAAGGTGAAGGGAATCATCTCTGGAATGAGATGGGACTCGAAGATGGTTGATCATGAGGATGGTCCTTTGGTTCCTGAG
AAGGTTTTGATTGCTGTGAAGCAGTATTGGGTCACCAACTCCACTGCGTCTCACTGAAGTAATGTTTACTACGTACCCGGTGTGAG
TGACCTGACATTTTGATCTTATGATAGAGCTTTCGAGCTACATTCTCTGTCTTTGTTACCACTTTTATAAGTACAATCTCTATTTA
TTAAATGTAATAGTTTATATTTGTTTCTTTGTCCCAAAAGCTTGGAACTTTTGTGGTGTATCATTGAATTATCAACTTTTATAATG
ACCGAGTTATGCTTCAAGC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_564265 putative methyltransferase PMT2 [Arabidopsis thaliana] | 1399 | 2e-152 |
| BAH19504 AT1G26850 [Arabidopsis thaliana] | 1399 | 2e-152 |
| XP_002893375 dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] | 1398 | 3e-152 |
| XP_002522425 ATP binding protein, putative [Ricinus communis] | 1162 | 6e-125 |
| XP_002311593 predicted protein [Populus trichocarpa] | 1151 | 1e-123 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| B9DFI7 Probable methyltransferase PMT2 | 1399 | 8e-154 |
| Q94EJ6 Probable methyltransferase PMT14 | 933 | 9e-100 |
| Q9SZX8 Probable methyltransferase PMT17 | 800 | 2e-084 |
| Q9C884 Probable methyltransferase PMT18 | 790 | 4e-083 |
| Q9ZPH9 Probable methyltransferase PMT15 | 773 | 3e-081 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9S8V6 ATP binding protein, putative | 1162 | 4e-125 |
| B9HJT1 Predicted protein | 1151 | 8e-124 |
| B9HVA8 Predicted protein | 1129 | 3e-121 |
| Q9M609 Putative uncharacterized protein | 1109 | 6e-119 |
| B7FM75 Putative uncharacterized protein | 1069 | 3e-114 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G26850.1 dehydration-responsive family protein | 1400 | 6e-155 |
| AT1G26850.2 dehydration-responsive family protein | 1400 | 6e-155 |
| AT4G18030.1 dehydration-responsive family protein | 933 | 8e-101 |
| AT1G26850.3 dehydration-responsive family protein | 822 | 6e-088 |
| AT4G10440.1 dehydration-responsive family protein | 800 | 2e-085 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
