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Information for unigene UN14049
| FASTA Sequence |
| Unigene ID: UN14049 | Length: 1604 |
| SNP | AGGGGATACAACTCCTCCTCCATCTCGTCGTCTCGTTTTCACTGAGCTCCGCCGGAAAAAGCTCCTGAGCTATGAAGTTTCTCATT
CAATCCATCGCTGGGAGGAATCGATCTCTGGTTCGAGCTCTGGTTAGTCGTCGTTTCTTCGCTTCTTCTTCTTCATCGCCGGAGGA
ACTCGCGAAGAGAAACTACGCCAACGATCTGTCGGAGTACAACTCAGTTGTTAACTCCGTCACAGCTCAGCGCAGGCACTATCTGT
TGAGGGATGTGTATGATGATATGAAGCTAGATGGTGTGCAGCCTACAGCTGATATATTCCATTCGTTTGTCGTGGGAGTGATGAAG
GGTGCTCGTTTAAGTGATGCTTTCTTTTTCCGTGAAGAAATGAAGTCCATGGGAATTTCCCCAGATGTGAACTTGTACAACTTCTT
GATTTCCACTTGTGGTAAATGCAAGAATGGGAAGGAGGCGATCCGAGTTTTCGAGGAGATGAAGAGATATGATGTGAAACCAAATG
GACAGACTTTTGTCTGCCTGCTGAATGCCTGCGCTGTTTCTGGCCAGTTAGATCTTGTGTATGCGATTGTTAGAGATATGACTGCT
GCTGGTGTTGGTTTGAACCAGTTCTGCTATGCAGGACTCATAACTGCTCACCTAAACAAGGAGCCTAGACCTGAAAATCTTTCCAC
CAAGATTCTCGAGTTGGTGGAGCAGTCAAAAGGCTGGTCATCAATTGATTCATCAAGGAAGAGTGCAGAAGATATGATGTTTAACA
TCAGTGAAGAAGAGCTGTACAATGTTCCGACCGCTGAATATTCTCACAGGAGCAGGTTTCTCCAGAGGAATTTGACCGTGTACCAC
GTAGCATTCAGTGCGCTCGCTGATATTAAGGATGTACAAGCAACGGAAGCTCTTCTTGAGATGCTTAAGAAAGACGGAAAAAATAC
GGATACTTACTGCGTGATACAGATTATGAGGTGCTACCTACACTCGAAAGACTTTAAAAATGGTCTCAAATGGTTTGGAGATTACA
TGAACTCAGACAAAACCCCTGCCATGGAACTCTACACGACTCTTATAGAAGGAGCCATGACAGATTACACAGAGGAAGGAATGAAG
ATTGCTCAAGAGACTCTGGTCAGCATGAACGATAGAAATTTCTTCTTAGATGCAAGAACTGGAAGCAATCTGCTACTCAAAGCTGC
TGGTGAAAAGACCGGAGGGTACACGGTTGCCAATATGACATGGGATCTCATGCAAGCTCGGAATATTCCACAGACACTAGCTTCTG
TTGAAGCTTACTACAAGGGACTGAAAGAACGTGAGATACCAGAGGATGATCCGAGACTGATGCTAGTGACGCGTACATTCAATACC
CTGAAGCGCCAGCAAGGGACGTTTCCTAATCGACGTTAAGGCACAGGGACATGGAGGACGGGTTCTTCGTTTTTCTGCCCTTATTT
GCTTATTATGATCTCTGTAAACCATCCGGGTTATGCTTTTAAATCAGTCGTTTAGATGAATAAGGTGACTTCACATAAGAAGAAAC
TTCAACCATAGGATTTTTCGGATGTTACTCTTATTTCAATTTACTCTTGAAGCTGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAM65849 unknown [Arabidopsis thaliana] | 2046 | 3e-227 |
| NP_567990 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 2043 | 6e-227 |
| XP_002869056 hypothetical protein ARALYDRAFT_912780 [Arabidopsis lyrata subsp. lyrata] | 2037 | 3e-226 |
| XP_002270990 PREDICTED: hypothetical protein [Vitis vinifera] | 1457 | 5e-159 |
| XP_002526972 pentatricopeptide repeat-containing protein, putative [Ricinus communis] | 1408 | 3e-153 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8VYR5 Pentatricopeptide repeat-containing protein At4g35850, mitochondrial | 2043 | 3e-228 |
| Q9ZUU3 Pentatricopeptide repeat-containing protein At2g37230 | 166 | 1e-010 |
| Q9LK58 Pentatricopeptide repeat-containing protein At3g13150 | 163 | 3e-010 |
| Q940A6 Pentatricopeptide repeat-containing protein At4g19440, chloroplastic | 163 | 3e-010 |
| Q9CA58 Putative pentatricopeptide repeat-containing protein At1g74580 | 158 | 1e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SLV3 Pentatricopeptide repeat-containing protein, putative | 1408 | 2e-153 |
| Q6ASS1 Os05g0145600 protein | 1304 | 2e-141 |
| B8AXX6 Putative uncharacterized protein | 1302 | 3e-141 |
| C5Z009 Putative uncharacterized protein Sb09g003510 | 1238 | 9e-134 |
| B8A2V0 Putative uncharacterized protein | 1089 | 2e-116 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G35850.1 pentatricopeptide (PPR) repeat-containing protein | 2044 | 2e-229 |
| AT1G63230.1 pentatricopeptide (PPR) repeat-containing protein | 179 | 3e-013 |
| AT2G37230.1 pentatricopeptide (PPR) repeat-containing protein | 166 | 1e-011 |
| AT3G13150.1 pentatricopeptide (PPR) repeat-containing protein | 163 | 2e-011 |
| AT4G19440.1 pentatricopeptide (PPR) repeat-containing protein | 163 | 2e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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