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Information for unigene UN14080

FASTA Sequence
Unigene ID: UN14080Length: 1414 SSR 
GGAGAGACTCAGTGACCATTTCTATAATCTACCAATCTCTCTGACGCTCTTTCTGCTCCGGTGTCTCATCGTCACGTCCGGCGCAT
TTCGTGGAAGCAGAAGAGCCTATAAAGTTTTTTTTTTCGGAGCTCATGGACAGCTTCTGGCAATTGGGTGATGAGCTACGAGGTCA
GACTCAGTCACGAGCATCAGAGGATCACAAATGGTCCACCGTCGCAACCAAGCTCGCTGAGCAGACAAGGATGAAAAGCGAAAGGT
CGAACAACCTCGATCTCTCCAAAGCTGGTTACTCCGAGTTCAGACCATCCGACAAGCTTAGTTTCCACGACAACAACAACAACAAC
TTCAGCTTAACGTGTTTAACAACAGCAATGTTTACAACAACATGAATGCTGCTGTTTTCCAGAAGAATGATTTCTTCAAAAGTGGA
GGAGGCAACACGAAGGTTAACAAGTATAGTGGTAATGTTGTTGCTAACAAAGAGCTGAGCAAACACAACAACAGCAATGATAATGC
TGTTGACAAGAGGTTTAAGACTCTGCCTGCGTCGGAGACGCTTCCGAGGAATGAAGTTCTTGGCGGGTACATCTTTGTTTGTAACA
ACGATACCATGGAGGAGGACTTGAAGCGTCACCTCTTTGGGTTACCTCCAAGATACAGGGACTCTGTGAGGGCAATAACACCCGGA
TTGCCTCTGTTTCTTTACAATTACACCACTCACCAGCTCCATGGTATCTTTGAGGCAACAACTTTTGGAGGTACTAATATAGATGC
GACTGCTTGGGAAGACAAAAAGTGCAAAGGAGAGTCAAGATTTCCCGCGCAGGTGAGGATCAGAGTGAGGAAGATCTGCAAAGCCT
TGGAAGAGGATTCCTTCAGGCCTGTTCTTCACCACTACGATGGTCCAAAATTCCGCCTTGAGCTCTCTGTTCCCGAGACATTGGAT
CTGCTAGATCTCTGCGAACAAGCTGGTTCTCCATAAAGCCGATCAACCTTGCATTACCACGTTGCTAAGTGGCGGAGTGGCGTTCT
GTCTGAAATCTATATCTATATATATATATGCATAGTACCGTAAGAGCGTAAGCTTGTGGGATTTAGTTAAGAGTCATGTATGGTTT
ACTAAGTGAGGAGTGTGTGCGTCTTAGCAAAAGGGTGAAGAGGCTCCGGGGAATAAGCGCACGACTCTCAGTTCTTGTTGTGTCTC
TAATGTGAGTTTGTCTCTGTGTGTTGTGAGAGATTTGATAACTCCTTTGAAACATAAGATTTTATGTAGAAGAATATATATAGAGA
GAAAGTGAGAGTAAACAACAGAGCCAGAAACAATGGAATGAGCTTCTGTTTGTGTTTGCTTGTGTAAGGAAAGTTTAAACAAATGT
TGTTGTGTTTCATTGAAAGGAGTTAAAATACGAAAAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002875357 hypothetical protein ARALYDRAFT_484493 [Arabidopsis lyrata subsp. lyrata]9664e-102
NP_189345 DCD (Development and Cell Death) domain protein [Arabidopsis thaliana]9522e-100
AAM64572 gda-1, putative [Arabidopsis thaliana]9512e-100
CAD37200 GDA2 protein [Pisum sativum]8625e-090
XP_002328947 predicted protein [Populus trichocarpa]8535e-089

Swiss-Prot top hits (Blast detail)Scoree value
P37707 B2 protein7091e-073

TrEMBL top hits (Blast detail)Scoree value
Q9LSC7 AT3g27090/MOJ10_189521e-100
Q8LBT1 Gda-1, putative9511e-100
Q8L6E9 GDA2 protein8623e-090
B9N102 Predicted protein8533e-089
C6TM49 Putative uncharacterized protein8524e-089

Arabidopsis top hits (Blast detail)Scoree value
AT3G27090.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42050.1); Has 642 Blast hits to 564 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).9526e-103
AT5G42050.1 FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27090.1); Has 5084 Blast hits to 2870 proteins in 85 species: Archae - 0; Bacteria - 24; Metazoa - 270; Fungi - 58; Plants - 157; Viruses - 8; Other Eukaryotes - 4567 (source: NCBI BLink).6901e-072
AT3G11000.1 LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01660.1); Has 173 Blast hits to 164 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 4; Plants - 153; Viruses - 1; Other Eukaryotes - 7 (source: NCBI BLink).2402e-020
AT3G11000.2 EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01660.1).2402e-020
AT5G61910.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32910.1); Has 4051 Blast hits to 2453 proteins in 312 species: Archae - 1; Bacteria - 477; Metazoa - 1792; Fungi - 482; Plants - 477; Viruses - 8; Other Eukaryotes - 814 (source: NCBI BLink).2341e-019

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
126  67%
 
72  22%
 
61  11%

Unigene MembersMember information