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Information for unigene UN14111
| FASTA Sequence |
| Unigene ID: UN14111 | Length: 1003 |
SSR | | GGGGAGGGTTAGAGAAGAATGGAGATGATGATGATGCAGGAGCAGGAGGAGGCGGCAGCGGCAGCAGCAAATAAAGCTGGATCGGA
GGTGTCTTCTCCAAACCAGACGATTTACATCAATAATCTCAACGAAAAAGTCAAGCTCGATGAGCTGAAGAAGTCGCTAAATGCGG
TGTTCTCGCAGTACGGGAAGATAGTGGAGGTGTTGGCGTTTAAGACATTGAAGCACAAAGGGCAAGCTTGGGTTGTGTTCGACAAT
CCTGAATCTGCTTCCAATGCTATTTCCAAGATGAATGGATTCCCCTTCTACGACAAACCCATGAGAATACAATTTGCTAAAACGAA
ATCAGATGTTATTGCCAAGGCTGACGGCACCTTTGTTCCTCGCGAGAAACGAAAGCGACACGAGGAGAAAGGTGGTAAGAAAAAGA
AAGAGCAGCACCATGATAATACACGTATGCCCATCCCACCATATCCTGGTGTCTATGGATCTGCCCCTCCTCTTTCGCAAGTACCA
TACCCTGGTGGTGGTGGTGGTGGTGGTGGTGTCAAAAGCAATCTTCCCGAGGCACCCGCACCCCCAAACAACATCCTCTTTGTCCA
ACACCTTCCTCACGACACAACTCCTGAGAGGCTTCAGGAACTCTTCGGCAATTACCATGGCTTCAAGGAGGTTAGGATGGTTGCAG
CCAAGCCTGGTATTGCTTTCGTTGAGTTTGCTGACGAGATGCAGTCTACCGCTGCTATGCACGGTCTTGAAGGTTTCACCATTCAC
CAAACCCCTATGCACATCACCTATGCTAAGAAATAAACCCCCTCCATTTTGGATTTTGGTGTGGTGCTACTATTATTATCTCCCTG
CATCTGTCTTTGTATCTGTCAATGCTACTACCTCTTCTTTCTTCTCTTGTGTTAGAGATTTTTTTTTTCTTAGAATATATTACAAC
TATCCAGAGTAAGAACAGGTTTTAATGGGCTTTTATTGACCCATTCACCGTTAGCTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_182280 spliceosomal protein U1A [Arabidopsis thaliana] | 988 | 7e-105 |
| XP_002880313 hypothetical protein ARALYDRAFT_483938 [Arabidopsis lyrata subsp. lyrata] | 986 | 1e-104 |
| XP_002523100 small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis] | 876 | 6e-092 |
| XP_002270967 PREDICTED: hypothetical protein [Vitis vinifera] | 851 | 5e-089 |
| ABK94716 unknown [Populus trichocarpa] | 848 | 1e-088 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54J05 U2 small nuclear ribonucleoprotein B'' | 443 | 5e-043 |
| P45429 U1 small nuclear ribonucleoprotein A | 370 | 1e-034 |
| P09012 U1 small nuclear ribonucleoprotein A | 368 | 2e-034 |
| Q06AA4 U1 small nuclear ribonucleoprotein A | 367 | 3e-034 |
| Q2KIR1 U1 small nuclear ribonucleoprotein A | 366 | 4e-034 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q39244 At2g47580/T30B22.12 | 988 | 5e-105 |
| B9SAT1 Small nuclear ribonucleoprotein U1a,U2b, putative | 876 | 4e-092 |
| A9PEB3 Putative uncharacterized protein | 848 | 8e-089 |
| B7FJ52 Putative uncharacterized protein | 843 | 3e-088 |
| B9GSB4 Predicted protein | 843 | 3e-088 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G47580.1 U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding / nucleic acid binding / nucleotide binding | 999 | 1e-108 |
| AT2G30260.1 U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding | 371 | 9e-036 |
| AT1G06960.1 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | 370 | 1e-035 |
| AT1G06960.2 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | 370 | 1e-035 |
| AT1G06960.3 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | 272 | 3e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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