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Information for unigene UN14143
| FASTA Sequence |
| Unigene ID: UN14143 | Length: 1433 |
| SNP | GGATGCGACACGTATAACGAATAGTGTCTCTATAGGCTTTTCAAGCTCTTCACGTTCTCAACACATAGCTTATAAGAAGTGCAGTA
TAATAGCCATGATGAGGATTATGTAAGAAGACATTTGAGGCTAACAATAGTGGTTCTTCTATAGGAGTGACCTCAATTCTCAAACT
CTTTCACTTTCTCCACGTGGCTTTCTATTTTTCAAGTGATAAAAAATACAATTGAATTTTCCGCGCGATCTAGTCCAACTGTACCG
AGTAGCAGTTGTTGTCTCCATGTCGATGCTAATATTAGTTGACTTCTCTTGGCGTTGAATTAGAGAAGTAGATCATATTAAAGTAG
ATAGACCAGTATCCTACAGTGTATGAGCGTTGAACCAAACAAATTTATAATGTCTTACATTCCTAGTTTCTTCTTAGTACGATGCT
CTAAATGAGCTTGAACTTGCGCATAACTATGTAATAAAACTAATCCAACTCCTATATATATTCTATTTCTAATGAAATAGCATTGC
TTGAAGAATCAATGTTACCACCATAGTGTGACCAAAGTGAATCTGCAAGTTGGTAGAGTCTGATGGTGTTGGATTGTTCCCATTAG
GTGAACCATCAAACCCGTAAACCGCTGAACCTCCTGAGGATGGATTGGGTAGAGTGTTTGATGAAGGATTCGCCGGGTTAAAAACA
GCTGGTGGAGTTCCAACCCCTATTGTCACGCCTCCTGTTGGTGTTATAGGTGTTGATGTGACAGGAGGTTGGTTAACTGTTTGTGT
CGATGGAGTTGGTGTTGTTGTTCCTACAGGAGTTGACGTTGATGAACTAGAACCTGTCTGGTAAACGCAAGAACCAGTACTTGGGT
TGGTGGTAACAACTGAGGCTGCACCGCCAAAATCACAGCTTTGTGGAGAAGGGTTCTTCTGGTAATAGCTGTTGAAGGCAAATGAG
GCATGATTCTGAAGACTGATGGGCGAATAACAGCTGCCTCCTTGTTGTATCTGAGAGCAATCCGCTTTACCGATCCCACAGGCATA
GTCAAGAGCCAACTGGAGTGAGGTTTGGGAGGCTCCAGGCTTTGCCACGCACCAGCTTTGTCCTGAAACCGATGGAGAATTTGAGG
AAACAGGCGGTGGAATCACAGGAACCGTCCCTGAGGGTTGAGTTGGAGGATACTGAGTCACTGGATTGCTCACTGGTGGTGTGAGT
GTAGGAGGGACTACTGTGACTGGAGGGTTAAGAGGAAGTGCTGGAGATGGATTTGTGGGCGTTATGGTCACCGGAGGAAATGTAGT
AGCAGGTGGTGTAGTTGTAGGGTTTGTAGGGAAGACAGTTGGTGGGTTTATGACATCATGAGTTGTTGAGGAACAGAGTGGGACGA
GAGTAAGAAACAAGAAGAAGTAACTCTGTTTCTCCATCATTGCTTGAAGTTGTTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002889751 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1133 | 2e-121 |
| NP_172417 carbohydrate-binding X8 domain-containing protein [Arabidopsis thaliana] | 1131 | 3e-121 |
| XP_002512573 hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] | 650 | 2e-065 |
| CAN65737 hypothetical protein VITISV_037753 [Vitis vinifera] | 616 | 2e-061 |
| XP_002276666 PREDICTED: hypothetical protein [Vitis vinifera] | 616 | 2e-061 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q93V72 Glucan endo-1,3-beta-glucosidase-like protein At1g69295 | 305 | 8e-027 |
| O65399 Glucan endo-1,3-beta-glucosidase 1 | 264 | 4e-022 |
| Q9ZU91 Glucan endo-1,3-beta-glucosidase 3 | 259 | 2e-021 |
| Q9FJU9 Glucan endo-1,3-beta-glucosidase 13 | 244 | 9e-020 |
| Q9M2K6 Glucan endo-1,3-beta-glucosidase-like protein 1 | 236 | 8e-019 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RFQ4 Hydrolase, hydrolyzing O-glycosyl compounds, putative | 650 | 1e-065 |
| A5BJT9 Putative uncharacterized protein | 616 | 1e-061 |
| B9I6M0 Predicted protein | 609 | 7e-061 |
| B8AMS1 Putative uncharacterized protein | 471 | 7e-045 |
| Q10B15 Expressed protein | 471 | 7e-045 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G09460.1 glucan endo-1,3-beta-glucosidase-related | 1132 | 8e-124 |
| AT1G29380.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30933.2); Has 72661 Blast hits to 25630 proteins in 1396 species: Archae - 121; Bacteria - 23698; Metazoa - 22516; Fungi - 4473; Plants - 9059; Viruses - 967; Other Eukaryotes - 11827 (source: NCBI BLink). | 373 | 9e-036 |
| AT2G30933.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29380.1); Has 799 Blast hits to 763 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 23; Plants - 773; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | 354 | 1e-033 |
| AT2G30933.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glucan endo-1,3-beta-glucosidase-related (TAIR:AT1G09460.1); Has 762 Blast hits to 726 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 759; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | 327 | 2e-030 |
| AT4G05430.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glucan endo-1,3-beta-glucosidase-related (TAIR:AT1G09460.1); Has 776 Blast hits to 740 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 770; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | 284 | 2e-025 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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