 |
Information for unigene UN14153
| FASTA Sequence |
| Unigene ID: UN14153 | Length: 1420 |
| SNP | CGTCTTAACTCCACCAGGATGTTTATTTTACAGAAAAACACGCCAAAAAGTTTCAATGTGATCAAATACGTCCCGCTAATAACACA
TACATTGTGGCTGATGTGACTGATATTCTCTTCGCGTACAAGCACTTATTATTGGAAAAATAATGAAAATTCTCTTCAAAGTTTTA
CAGATGATTAAACAGAAGCTTGAACATGGGAGTCCACTGACTTCAGAACCTCCTCTCCCATCTCCTTGCACCCCACAAGTTTAGTT
CCAGCGGAGTAGATGTCTCCTGTTCTGAATCCTTTGTTCAGAGCACCCAACACCGCGTCTTCAATTCTCTTAGCTGCCTTTTCTTC
TCCTAGTCCGTACTTCAGAAGCATCGCAGCGCTGAGGATGGTTGCCAACGGGTTTGCTTTATCCTGTCCAGCAATATCAGGTGCGG
AGCCATGTATAGGTTCAAAGAGTCCAGGTCCCGAATCACTAAGACTGGCAGAGGGAAGCATGCCAATGCTTCCTGTGATCATTGAC
GCTTCATCAGATAATATATCACCAAAAATGTTGTTTGTGACAATGGTGTCAAACTGTTTCGGATCACGAACAAGCTGCATGGCAGC
ATTGTCAACATACATATGTGACAGTTCAACATCAGGATATTCAGCAGCTAATGCGGTTACTCGCCTCCTCCATAAGATCGAGGCAT
CCAAGACGTTAGCTTTGTCAACAGAACACAGCTTGCCACGCCGTTTCCTAGCAGTCTCGAAGGCAACACGAGCAATTCTATCAATC
TCGTGAGCAGCATAGACCTCGGTATTAAACCCAACTTCCTCACCATTTTCATTAGTCTTAATGCCCCTTGGCACTCCAAAGTAGAT
ACCTCCAGTAAGCTCCCTTACAACCATAAGATCAACACCTTCTGCAACCTCTCTCTTCAAGGTAGAAGCATCCACTAACTGGGGAA
GAACAGTAGCAGGTCTGAGATTAGCAAAGACTTTAAGACCAGCCCGAAGTTGAAGTAAACCAGTCTCAGGCTTGAGATGTTTTTCA
TTCTTATCCCATTTATACCCTCCAATGGCTCCAAGAAGCACAGCATCAGATTCTTTAGCAGCGGAGATGGTGTCCTCAGGCAAAGG
CACTCCGACCAAATCCAAAGCAGCTCCTCCTACAGGCATTTCCTGGAAGCTAAACTCCAGACCTTCCAAGGAACCAGCTTGCTGAA
GCACATTTTTAGCTATGGAGATAACCTCCGGACCGATTCCGTCTCCGGGAAGGAGAGTAATGTTGTATCTCTTTTTCCCGGGGGAA
GCAGCGGCGCATCTTACTCTCAAGGGTGCGGATGAGGATTGTTTGGTGAGAGCTCTGAACGTTGCCGGAAACTTGACCGGTCGGAT
GTTTGTCTGCAGAGCCGCCGCCGCCATTATTTCAGGGAGAAAAA
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| P29102 RecName: Full=3-isopropylmalate dehydrogenase, chloroplastic; Short=3-IPM-DH; Short=IMDH; AltName: Full=Beta-IPM dehydrogenase; Flags: Precursor | 2011 | 3e-223 |
| NP_178171 3-isopropylmalate dehydrogenase 2 [Arabidopsis thaliana] | 1894 | 1e-209 |
| XP_002889286 hypothetical protein ARALYDRAFT_477193 [Arabidopsis lyrata subsp. lyrata] | 1894 | 1e-209 |
| AAL32519 putative 3-isopropylmalate dehydrogenase [Arabidopsis thaliana] | 1888 | 5e-209 |
| NP_174403 3-isopropylmalate dehydrogenase 1 [Arabidopsis thaliana] | 1768 | 4e-195 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P29102 3-isopropylmalate dehydrogenase, chloroplastic | 2011 | 1e-224 |
| P93832 3-isopropylmalate dehydrogenase 2, chloroplastic | 1894 | 4e-211 |
| Q9SA14 3-isopropylmalate dehydrogenase 1, chloroplastic | 1768 | 2e-196 |
| Q9FMT1 3-isopropylmalate dehydrogenase 3, chloroplastic | 1760 | 1e-195 |
| P73960 3-isopropylmalate dehydrogenase | 1287 | 1e-140 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LB97 3-isopropylmalate dehydrogenase | 1764 | 8e-195 |
| Q5XF32 3-isopropylmalate dehydrogenase | 1760 | 2e-194 |
| B9SWT3 3-isopropylmalate dehydrogenase | 1679 | 6e-185 |
| B9GG50 3-isopropylmalate dehydrogenase | 1674 | 2e-184 |
| Q2V379 3-isopropylmalate dehydrogenase | 1663 | 4e-183 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G80560.1 3-isopropylmalate dehydrogenase, chloroplast, putative | 1895 | 3e-212 |
| AT1G31180.1 3-isopropylmalate dehydrogenase, chloroplast, putative | 1768 | 1e-197 |
| AT5G14200.1 3-isopropylmalate dehydrogenase, chloroplast, putative | 1761 | 1e-196 |
| AT5G14200.3 3-isopropylmalate dehydrogenase, chloroplast, putative | 1663 | 2e-185 |
| AT5G14200.2 3-isopropylmalate dehydrogenase, chloroplast, putative | 1166 | 9e-128 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
