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Information for unigene UN14169
| FASTA Sequence |
| Unigene ID: UN14169 | Length: 1200 |
SSR | SNP | GACCCTGAGAAGCTACTTGTTGAGTTCGAGAATGCTAGAGTGTTGATCACTGATCAGAAGATCACTGCCATCAAAGACATCATCCC
AATCTTGGAGAAGACCACTCAGCTTCGTGCTCCACTGCTGATCATCGCAGAGGATGTTACAGGAGAGGCCTTAGCGACTCTCGTCG
TGAACAAACTCCGTGGTGTTCTCAACGTTGTCGCCGTGGAAGCTCCTGGATTTGAGAGAGAGGAGGAAAGCTATGCTTCAAGATAT
CGCTATCTTGACAGGAGCTGAGTACCAAGCACTTGACATGGGCCTGCTGGTGGAGAACACAACCATAGATCAGTTGGGTATCGCTC
GTAAAGTGACCATAAGCAAAGACTCGACTACGCTCATCGCGGATGCGGCTTCCAAGGACGAGTTGCAAGCTCGTATCTCTCAGCTG
AAGAAGGAACTGTTCGAGACTGACTCTGTGTACGACTCGGAGAAGCTCGCTGAGAGAATAGCCAAACTCTCTGGTGGTGTTGCCGT
CATTAAAGTCGGAGCAGCGACTGAAACCGAGCTGGAGGACCGTAAGCTTCGTATCGAGGACGCGAAGAACGCGACGTTTGCTGCTA
TCGAGGAAGGGATAGTCCCCGGTGGTGGTGCGACTCTGGTGCATCTCTCCACTGTTATCCCTGCCATTAAGGAGACGTTTGAGGAC
GCTGATGAACGTCTGGGAGCTGATATAGTACAGAAGGCATTGGTGGCACCAGCAGCACTTATTGCGCAGAACGCTGGGATTGAAGG
AGAAGTTGTGGTGGAGAAGATTATGTTCAGTGAATGGGAGCTAGGGTACAACGCCATGACTGATACCTATGAGAATCTGTTGGAAG
CTGGAGTGATTGATCCGGCTAAAGTGACGAGATGTGCGCTTCAGAACGCTGCTTCGGTTGCAGGGATGGTGCTGACCACTCAGGCT
ATCGTTGTTGACAAGCCTAAACCTAAGGCTGCTGCTGCTGCTGCACCTGAGGGCCTCATGGTGTAATGAAGTTGCACATGTGTATC
TCTTGTTCCCCATCTATCGATCTGCAATGTTTTTAAGTTATTTTTTCTCTGGGGGAAATGAGTTTGTTTAATGAGAAATAATTATC
TTTTTTTTTTGAGTAAGGATTGTTCTGATTTTGCATAATAAAACTTGGGAAGTTTAGTATTGAGAATGCTGGAGATTGGCTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| P21239 RecName: Full=RuBisCO large subunit-binding protein subunit alpha, chloroplastic; AltName: Full=60 kDa chaperonin subunit alpha; AltName: Full=CPN-60 alpha; Flags: Precursor | 1218 | 2e-131 |
| NP_180367 chaperonin-60alpha [Arabidopsis thaliana] | 1206 | 5e-130 |
| AAM63618 putative rubisco subunit binding-protein alpha subunit [Arabidopsis thaliana] | 1206 | 5e-130 |
| BAD95121 putative rubisco subunit binding-protein alpha subunit [Arabidopsis thaliana] | 1199 | 3e-129 |
| XP_002880957 CPN60A [Arabidopsis lyrata subsp. lyrata] | 1199 | 3e-129 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P21239 RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) | 1218 | 8e-133 |
| P21238 RuBisCO large subunit-binding protein subunit alpha, chloroplastic | 1206 | 2e-131 |
| P34794 RuBisCO large subunit-binding protein subunit alpha, chloroplastic | 1160 | 4e-126 |
| P08926 RuBisCO large subunit-binding protein subunit alpha, chloroplastic | 1140 | 9e-124 |
| P08823 RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) | 1058 | 3e-114 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L5U4 Putative rubisco subunit binding-protein alpha subunit | 1206 | 3e-130 |
| Q56WB8 Putative rubisco subunit binding-protein alpha subunit (Fragment) | 1199 | 2e-129 |
| B9HQD5 Predicted protein | 1126 | 6e-121 |
| Q2PEP1 Putative rubisco subunit binding-protein alpha subunit | 1125 | 8e-121 |
| Q2PEP8 Putative rubisco subunit binding-protein alpha subunit (Fragment) | 1125 | 8e-121 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G28000.1 CPN60A (CHAPERONIN-60ALPHA); ATP binding / protein binding | 1207 | 1e-132 |
| AT5G18820.1 EMB3007 (embryo defective 3007); ATP binding / protein binding | 779 | 6e-083 |
| AT5G56500.1 ATP binding / protein binding | 618 | 3e-064 |
| AT5G56500.2 ATP binding / protein binding | 618 | 3e-064 |
| AT3G13470.1 chaperonin, putative | 615 | 6e-064 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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