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Information for unigene UN14234

FASTA Sequence
Unigene ID: UN14234Length: 1210  SNP
CAGAATGATCTTATAAAATCTATTGTACCGTTTCTGTCAAGACTCACACATCTTCAGAAAAAAACTTTCTCATGTGCTTAAAAGAT
GAACAAATCAATTACATATAAACTCTGCTGCAAAAGAATTGGTACTAACATAAACTCGTACTAGAGCCTGTCTTTCAGTTTATACA
AGTAACTTCATCAGTCTTAAACTTCATTGGACAGCTACTATGTACATGAGATAGGAAGGTTACACTGATTATATTTCCTCAATTTT
TGGAGGACTTTTGAACCTCTTGATCCACAGTTTCCGAGGGAAATTTGCTGAGTAGCCAAACCAACACAACACCGACAAGAGCACCA
GAGAGATGCGCAATGTGATTAACAGTCTGCAAAGAATAGCCACCATATATAGTCCCAGATACTCCAGCTGAAGCCTGAGCTGCTTC
CATTACCCTCTCAATAACGAACTGACCCAATATAAGAACTTCAAGGATCTTCCTCCAATCCCAAGACATCTTGACGAGGACGCTAA
TAGCAAACAACCCAAAAACAGCTCCAGAGGCTCCAACGGAAACAGCATTTCTCGGCAAAACTAACCAAGAAACCAGGTTAGCTCCA
ACACCAGTGAACAAGTAAGACAGCCACAAACCAAAGTTCCCTTCCTCTTCTTCAACAAGCTTTCCAAAGATGTAGAGGAAGAAAAG
GTTGCTGGAGAGATGGTTCCAGCTAGCATGACAGAACGTTGCAGTTACAAACTGGTACCAGGCTGGAAAATTGTGATAGAGATAGA
GAGACTTGATGCTGCGAACCTGAAAGAAGTGATCTGCTACATAGACGCCAAGATTGATGAGTATGATCCAGAATATGCCATTGGCT
CTCTTTTGTGGATTCTGTTTATCTCCTCCTTTACTAAGCTCAAGTTGTGGCGTTATGTCGGATTGGCTGAACCTGCAAGCGATAGG
AGATTTTGAGAAGGTGGGTGGGCGAAAGGTTGTGGCTTTTGATGAATTGAGCTCGGAGATTGAGGAAAGTTGGAAGCTTTTGATGT
TGTTGGTGAGTGGTATCGGCGACGGAGGTGCGCGGCGGAGATGGGAGGGAGGTGAAGGCGGTGTTGTGAAACGAGTGGAAGATTGT
GGGAGGGAGAGACGGTGAAGGTGAAGCTGCGACATTTGCGAGCTCGTTTGTATTGTACTCAGCAAGCAGAGCAAGCAAGAGACCAA
ACCTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002874277 rhomboid family protein [Arabidopsis lyrata subsp. lyrata]11601e-124
NP_680221 rhomboid-like protein 11 [Arabidopsis thaliana]11393e-122
CBI20892 unnamed protein product [Vitis vinifera]9995e-106
XP_002516572 conserved hypothetical protein [Ricinus communis]9565e-101
XP_002281548 PREDICTED: hypothetical protein [Vitis vinifera]9484e-100

Swiss-Prot top hits (Blast detail)Scoree value
P96617 Putative rhomboid protease ydcA1344e-007

TrEMBL top hits (Blast detail)Scoree value
Q84MB5 At5g2575211392e-122
B9RS53 Putative uncharacterized protein9563e-101
B9IKN1 Predicted protein (Fragment)9393e-099
C6T841 Putative uncharacterized protein9171e-096
A2Y1P8 Putative uncharacterized protein7825e-081

Arabidopsis top hits (Blast detail)Scoree value
AT5G25752.1 RBL11 (RHOMBOID-LIKE PROTEIN 11)11391e-124
AT5G25640.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RBL11 (RHOMBOID-LIKE PROTEIN 11) (TAIR:AT5G25752.1); Has 53 Blast hits to 53 proteins in 25 species: Archae - 2; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).3172e-029
AT5G07250.1 ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)1372e-008
AT5G07250.2 ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)1372e-008
AT3G53780.1 rhomboid family protein1192e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
76  67%
 
91  11%
 
62  22%

Unigene MembersMember information