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Information for unigene UN14244
| FASTA Sequence |
| Unigene ID: UN14244 | Length: 695 |
SSR | SNP | GAGACCACTCAAGGAAATCCCGGAGAAGGCGATCCATCTAACACAACAATTTTTGTTGGGGCTTTGGATGAAAGTGTGACAGAAGA
TGTTTTGAAGTCTGTTTTTGGTCAATTTGGTGAACTCGTTCATGTTAAAATACCAGCAGGAAAACGTTGCGGATTTGTTCAATTTG
CTAATAGGGCTTGTGCAGAGCAAGGACTCAACGCGTTGAATGGAACACAACTTGGGGGACAAAGCATTCGTCTTTCATGGGGTCGC
AGTACTTCCAACAAACAGGCTCAACCTGATCAAGGCCAGTATGGTGGTGGTGGTGGATACTATGGGTATCCTCCTCAGGGATACGA
AGGTTACGGATATGCACCCCCTCCTCAGGACCCTAACGCCTACTATGGTGGCTACCCTGGTGGTGGCTATGGAAACTACCAGCAGC
CTGGTGGTGGCTACCAGCAGCAACAGCAGTGAAGCATGATGTGAATGTCGTGGTCGAGCTGAAGTACTAGAAAGCTGTCTGTGCAT
TAGCTTTTTTCTCTCTACAACTCTTCTTTTTCTTTTGCTTTGTTTCTCTCTCTCGCGTGACAATTGTTGAGTGCCCTCCGTACACA
AAGAGGCTTTACCTGAAATACCCTTTTTTTGTCAATTTGACTATTACATTTCTCTTTGTTGTTTCAGTACCGTTTCTATTGCATCC
ACATTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| CAB36546 putative DNA binding protein [Arabidopsis thaliana] | 745 | 5e-077 |
| NP_567764 RNA recognition motif-containing protein [Arabidopsis thaliana] | 741 | 1e-076 |
| XP_002867529 hypothetical protein ARALYDRAFT_913848 [Arabidopsis lyrata subsp. lyrata] | 728 | 5e-075 |
| CBI26626 unnamed protein product [Vitis vinifera] | 595 | 1e-059 |
| CAN83958 hypothetical protein VITISV_039907 [Vitis vinifera] | 586 | 1e-058 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O60176 Uncharacterized RNA-binding protein C23E6.01c | 231 | 1e-018 |
| Q00539 Protein NAM8 | 229 | 2e-018 |
| P32831 Negative growth regulatory protein NGR1 | 213 | 1e-016 |
| O13759 RNA-binding post-transcriptional regulator csx1 | 201 | 3e-015 |
| Q6NZZ9 Pre-mRNA-splicing factor RBM22 | 157 | 4e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SZ39 Putative DNA binding protein | 745 | 4e-077 |
| Q93W34 Putative DNA binding protein | 741 | 1e-076 |
| A5C5B3 Putative uncharacterized protein | 586 | 1e-058 |
| B9SAD4 Nuclear acid binding protein, putative | 585 | 1e-058 |
| B9I0E1 Predicted protein | 571 | 5e-057 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G27000.1 ATRBP45C; RNA binding | 745 | 2e-079 |
| AT5G54900.1 ATRBP45A (RNA-binding protein 45A); RNA binding | 523 | 1e-053 |
| AT1G11650.2 RNA-binding protein 45 (RBP45), putative | 466 | 5e-047 |
| AT1G47500.1 ATRBP47C' (RNA-binding protein 47C'); RNA binding | 334 | 1e-031 |
| AT1G47490.1 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C); RNA binding | 333 | 1e-031 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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