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Information for unigene UN14260

FASTA Sequence
Unigene ID: UN14260Length: 940  SNP
AAATCAAAGCTTTCATTTCAGCTATATAATCAAAGTGCAAACAAAGATATATAAACTAAGTGAATCACTAGAACAAGCCCCAAAAG
GTATCATTCAAATGATAAAACTAGGGTTTGAGATATGACCGTTGCGCAAGCTAAGATAATACTTGAACAAGATTCAAGGGAAATTG
TAAACAAGGGTCATGTTTTTGTTTTCGACTGAAGATGATAAAAGCAAAACTCTGATAAGTTATATCACAAACCCGTCTTCAGTTGA
AAAGTCCAGAGTTTAGCCAGTCCTTGGTGACATCATCAAGATGATCATCAAAATCTGTGACGTCCTTCCATTTCTCAGATGAAATG
TAATCTGACAAAACTACATTGGCAGATGGCTCTTTCAAGAGTAGCTTGCTTCCTCCATCTGTTCCAACCACTCTCCAGTTCTTGGA
AGCATCTTTCACACAAAGCTGCATCACAGGGCTTCGATCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTGTCCAACAAGAGAA
TTGGCGCCTGGGGGAAATAGCGAGAGATGTGATCACCGATGTTCTTAGCCGCACCAGAGAGCTCCACATCGTCGAACCTCTCGTTG
GCATGGAAGTAGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCATGATGAGGGAGATCTCGAGAGGAGGGAGGAG
AGCGAGGTTGGAGTGAAAGAGCGGCACGGAGTCGGAGATCTCCACGACTCCTTCGTCCTTTGAGCTGATTCGACCGACGAGGACTC
CGTTGACCGCCGCCGTTTTGTGGCGCAGAGAGTGGAGAACGAGTTTGATGTACGCGTTCTGTGAGATCTCGTACTTCAATTCTCCG
TTGCCTCCCATCCCTTAACTCGATCTGGAGACTCACTGACTCAGTTCTAAGCCGCAATGTAATCGAGAGAGACGTTCTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_568832 uncharacterized protein [Arabidopsis thaliana]10173e-108
XP_002866119 EMB2731 [Arabidopsis lyrata subsp. lyrata]10163e-108
AAM64789 unknown [Arabidopsis thaliana]10111e-107
XP_002522792 Neighbor of COX4, putative [Ricinus communis]8093e-084
CAN78153 hypothetical protein VITISV_040251 [Vitis vinifera]7951e-082

Swiss-Prot top hits (Blast detail)Scoree value
Q9FG71 UPF0172 protein At5g5594010171e-109
Q9DB76 UPF0172 protein FAM158A2633e-022
Q5U1W7 UPF0172 protein FAM158A2599e-022
Q9W1Y1 UPF0172 protein CG35012599e-022
Q9Y3B6 UPF0172 protein FAM158A2501e-020

TrEMBL top hits (Blast detail)Scoree value
Q0WW87 Putative uncharacterized protein At5g5594010172e-108
Q8LBG0 Putative uncharacterized protein10119e-108
B9S9X3 Neighbor of COX4, putative8201e-085
A5APP0 Putative uncharacterized protein7951e-082
B9GFZ6 Predicted protein7941e-082

Arabidopsis top hits (Blast detail)Scoree value
AT5G55940.1 emb2731 (embryo defective 2731)10188e-111
AT5G51620.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: emb2731 (embryo defective 2731) (TAIR:AT5G55940.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).2525e-022
AT5G51620.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: emb2731 (embryo defective 2731) (TAIR:AT5G55940.1); Has 28 Blast hits to 28 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1773e-013
AT5G51620.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: emb2731 (embryo defective 2731) (TAIR:AT5G55940.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1773e-013

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
129  64%
 
82  14%
 
62  14%
 
191  7%

Unigene MembersMember information