Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN14276

FASTA Sequence
Unigene ID: UN14276Length: 1716 SSR 
GGAAAATTCAAGAACATAATAATTTGATTTTACTTTACATTGATAAGAGAATTATTGACTACACATTCGATGAGCAATGAATTGAA
TCTTTTCTTTTTTTCAGTTTATATTCACTATTTCAAAAATCCAAAATGTTTACAATTTGATGCTTTGTTCCACACACTCCCTCAAT
AATGTATCCTCAAGAAATCAAATTACTATGAACCCTAGTGAGTAAAACGAATTGAATTAAAACGGCATGATATGTGTCGTTTTGGT
GTCGTAAGCCGAAAGGCAAGACCTCGAATTCACCTTGAACACCTTAAGAAGATCCGTTAGCATCCGCCTCACGGCGGGAGAGCAAT
TGCTCTGCAACAGTAACAGAATCTTCGTAACGCCGTTAGTACTCGTAACAGCTTCAAGCGCCTTCTCTTCTTTGAAAAGATAAGAC
ACGCTCCAAAGCACCGTCACGGCGTGCTCCGTCGCCGCCGTCGATACTTTCATCAGCTTCTTAACCACCGTCTTCAAACACTCGCC
GTCTCCGCCGCAGATTTCCGATCTGCCTTCTTTGGTGGACGCCAGAGTCTCCAGAAGCTTCAAACATTTCTCCGTCACCGAAACGC
TCGACGTCGTTGGATCTGTTAGCAGCTTCGTGAGATCCGCGACGAGCTTCTCTCGGATTAGATTCAGTTTCACGCGTCTCGGTGAG
CTGATCGCGATCAAGCAGGACAGCGTTGCTTCGATCAAGCTCGAATCGGAGTCTCTGCTAATGGGATTTCATTAGCTCGCCGACTA
AACCGTCTCTCTCGGCGATTAACACCTTCGATTCGGAGTCAATCGCGATGAATTCGAGTAAACCGGCGCAGACAATCTTCAATTCA
ACATTCCCGGTTTTGAACAAGAAGACGATTGTCGTTAACCGATCTCGACCGTTGTTTAAAACCAGATTCGAAAACCGTCTCCGATC
CGAGAGTTTGGATCGAATCATGCTCAGAATCTTAACCGCCTCTTGAACGGCGAGTAGCTTAGGAGCGGAGGTGGATTTGAAATCCA
CCTGGCTCATGAGATCCACGAGAAGCCTCACGAAATCATCTTTCCCGGCGAGAAACCCTCTGTTATCGTCGGACTCTCTCGCGAAC
CGGAGAATCTTCGCCAGAATCTCCCGGTCGAACCTCTCCTCCTTCTCCGCCTTCACTCTGTCGATCGCGTCGGCGATCTCGTCTCT
CGTCGGAGCAGCTAACTCCGCCGATTCGACGCTTGCTCGCCGGCGAACGGAGTCCGACCAAATCTCGATGAGACGCTGGAGAGTCC
GGTTAGGTACGAAATCCTTGTTCTGAAGAATCTGCATCGTCGCCGGACACGTGTTGTTCCCGCCGTCGAGCCACCGTTGGATGCTT
GCTCGGTCGTAGGTAACGCCGGTGCAAAGACTGACCGGAGATTTCATAACGTCTAACGATATAGGACATCGGAAGAAGCTTGGTAC
GGTGATGTAGAGATCGTCTTTCCTCATTTTTTTTTAGATTGGCCGTTAGTTTTCCGTTTTGCTCCAGATAAAGCGTGTGGGATTCC
GTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACTGTGTTTATGTTTGAGAGAGAGAGTGCGTGGGGTTTGGTTTAAAAG
ATGAAAGAGAAAAAGAGTCAAACTTTGCTGACGTCAACTTTACCTTTTTTGACGGGCGTGTTTGTATTTAAATATCTTTTTA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002866627 U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata]10956e-117
NP_201271 U-box domain-containing protein 27 [Arabidopsis thaliana]10931e-116
XP_002873424 U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata]8009e-083
NP_196542 U-box domain-containing protein 28 [Arabidopsis thaliana]6548e-066
CAN83909 hypothetical protein VITISV_035044 [Vitis vinifera]6224e-062

Swiss-Prot top hits (Blast detail)Scoree value
Q9FLF4 U-box domain-containing protein 2710934e-118
Q9LXE3 U-box domain-containing protein 286543e-067
Q9LSA6 U-box domain-containing protein 296095e-062
Q9FXA4 U-box domain-containing protein 262484e-020
Q9C8D1 U-box domain-containing protein 202271e-017

TrEMBL top hits (Blast detail)Scoree value
A5C444 Putative uncharacterized protein6223e-062
B9RU03 E3 ubiquitin ligase PUB14, putative5425e-053
B9HEI4 Photoperiod-response-like protein5211e-050
B9MZA3 Predicted protein5202e-050
B9GTL1 Predicted protein4484e-042

Arabidopsis top hits (Blast detail)Scoree value
AT5G64660.1 U-box domain-containing protein10933e-119
AT5G09800.1 U-box domain-containing protein6552e-068
AT3G18710.1 PUB29 (PLANT U-BOX 29); ubiquitin-protein ligase6095e-063
AT1G49780.1 PUB26 (PLANT U-BOX 26); binding / ubiquitin-protein ligase2483e-021
AT1G66160.1 U-box domain-containing protein2279e-019

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  50%
 
112  50%

Unigene MembersMember information