Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN14377

FASTA Sequence
Unigene ID: UN14377Length: 464  SNP
AGGGTAAAAACCATTTTTCTTTTATCATAATATAAGAAGCAAACATATGTATGGGGGAGACGCAAAGTTACTCTCCTAGGAACATG
ATAGAAGTTACACAACAAACGATTTATTTTGTTTTCCAAGTTGTTGATAAATATGCACTGTCAAAGACAGGCTACATGGATAAGAA
CGGAAATCATTTCTTGCCGCTCTTCTTAAGTCCAGAGCCTCCAAAAGATCCCTTCTGTGATGCCTTGGCTCTCAGTTCTTTAAGTG
CCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTAGCCATATCGTGCTCGTCGTATTCCTTCTTATCAGCTTTCGGCTGCTTCAAAGGT
TTCGCCTTTCCTCCTTGCTTGGACGACATGACCGGTTTCTGGAGCTAGGGTTTGATGCTGCTTGTCTGAGAATTTGCGGAAAAGTA
GACTTTCAGACGACGGACTTTGTGTCTTCGATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_563969 translation machinery associated protein TMA7 [Arabidopsis thaliana]3104e-027
ACS96448 unknown protein [Jatropha curcas]2971e-025
NP_566533 Translation machinery associated TMA7 [Arabidopsis thaliana]2943e-025
XP_002862265 hypothetical protein ARALYDRAFT_920992 [Arabidopsis lyrata subsp. lyrata]2916e-025
ADK13061 conserved hypothetical protein 4 [Hevea brasiliensis]2908e-025

Swiss-Prot top hits (Blast detail)Scoree value
Q4SUE2 Coiled-coil domain-containing protein 721948e-015
A1A4Q4 Coiled-coil domain-containing protein 721921e-014
Q9XZS3 Coiled-coil domain-containing protein 72 homolog1921e-014
Q9Y2S6 Coiled-coil domain-containing protein 721921e-014
Q8K003 Coiled-coil domain-containing protein 721921e-014

TrEMBL top hits (Blast detail)Scoree value
Q9XI42 F9L1.21 protein3102e-027
D2D964 Putative uncharacterized protein2978e-026
Q1EBS5 At3g160402942e-025
A9NJV8 Putative uncharacterized protein2889e-025
B9RQP3 Coiled-coil domain-containing protein, putative2889e-025

Arabidopsis top hits (Blast detail)Scoree value
AT1G15270.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation machinery associated TMA7 (InterPro:IPR015157); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16040.1); Has 263 Blast hits to 263 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 48; Plants - 41; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).3112e-029
AT3G16040.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Translation machinery associated TMA7 (InterPro:IPR015157); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15270.1); Has 264 Blast hits to 264 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 48; Plants - 41; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).2952e-027

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
85  42%
 
95  42%
 
71  8%
 
111  8%

Unigene MembersMember information