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Information for unigene UN14379
| FASTA Sequence |
| Unigene ID: UN14379 | Length: 1109 |
SSR | | GGAAAACCCTAAACGGATCAAATTCTGGGAAGTCGATAGAGATCGATCTCCTCTCTCTCTCTCTCTCTTTCATCATCAAAGTTGCA
GGAAACCCGGATCGTTATGGCAGGAGGTGACCATCCGTTTCATCTGGAGACGGGAGTGTGGTGGGACATGAACACCTGTCCGGTTC
CCCCTGGTTTCGACCCTCGTCATGTCCGTGGGTGTATAAAATCTGCGTTGGAGAAGAAGATTGGTCGTCCTTCTGTAGTCAGCATC
TATGCCCTGGGCAACCTAGAATACATCCCAAGGGACCTCTTGGAAATGATCTCTTCCTCTGGAATCACTCTTATTCATGGCCTCCG
CAATATGATGGACTTTAATGGGTTTCTGGAAGAATGGTCTGACAACAGCATGGACACCACTTACACAATGGTGATAACCGATGATT
ATGGGATTGCTTATCCTCCTCTTCTTGGGCTTTTTGAATTCTCTAAGCTTTGTGCATATCCAAAAGATGGTCGGCTCATTGCCCTT
GCCAATCAAAGCAATCCCAGACATAGAGTGTTGCCCTGTGACTTTGTCTGGGAAGCTTTATTGTCTGATAATTACGCAGATTCGAC
CGGGAGTAAACCTCTCTACGGGAGTAAACCTCTCTACGTGTGCAACATATGCGATACTTATTTCGAAGAAGAATTCAGCCCTCATC
TCAAATTCAGCACTCATCTCAAGGGTGAAGGACACAGAACAAAGTTGTTTGATATAGCGGCTAGAGACTCCAGCAACGGTGAGCTT
AAACATTTTTGCCAAGTTTGCAATTATCCCGCCGACGTCGATTTTAACTTACGCCTCCATAACCAAAGTGAAGAACATAAGCTGGC
TGCGAAAAAGGCTCAAGAAGAGGACAATTGCGAGAGCAGGAACAGAGGTCCAGAGTGGGATCCGGTTGGCGAGATAAGAAGCAATC
TCTCTTGAACGAGGCAAACAGTGAAGATCATTGATCATTGTTGTGTTTAAGTTTACTACATAATACTTATCTTATTATGTTTAATA
GTTTGTTCGTCCGCCACTAAAATATTTCTAAGTCTTGTTTGTTTGCTTTTTTTTTTATCGGTTAAAATGAAAATCTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002883443 hypothetical protein ARALYDRAFT_342502 [Arabidopsis lyrata subsp. lyrata] | 171 | 4e-010 |
| XP_002872943 predicted protein [Arabidopsis lyrata subsp. lyrata] | 166 | 2e-009 |
| XP_002872942 predicted protein [Arabidopsis lyrata subsp. lyrata] | 159 | 1e-008 |
| XP_002878481 predicted protein [Arabidopsis lyrata subsp. lyrata] | 158 | 1e-008 |
| XP_002892070 hypothetical protein ARALYDRAFT_887319 [Arabidopsis lyrata subsp. lyrata] | 156 | 2e-008 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LR50 T25N20.5 | 168 | 7e-010 |
| Q9LZI1 Putative uncharacterized protein F26K9_280 | 155 | 2e-008 |
| Q9FJS6 Genomic DNA, chromosome 5, P1 clone:MJE4 | 143 | 5e-007 |
| Q9LTU0 Gb|AAC80583.1 | 143 | 5e-007 |
| Q9FNP7 Emb|CAB71880.1 | 140 | 1e-006 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G62850.1 zinc finger protein-related | 155 | 1e-010 |
| AT5G35640.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G01355.1); Has 85 Blast hits to 83 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 148 | 8e-010 |
| AT3G60940.1 unknown protein | 135 | 2e-008 |
| AT5G61180.1 unknown protein | 132 | 5e-008 |
| AT3G13280.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sperm cell, leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G01355.1); Has 66 Blast hits to 64 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 127 | 2e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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