RadishBase

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Information for unigene UN14391

FASTA Sequence

Unigene ID: UN14391	Length: 1145	SSR
GAAAATAATGTTAATTTATTGAATTACTAAAACAAGGGGAGATAGTGCAACACATTATAAAACTGAATAGTTTTGTCGAAATTATT CTAAAAGACATGCATATTAATACGTTACGTGATTCTCACAAAAGATGACAGTTTAGGAAAAACAACCAGACCGGAATAACCACTTA AATGATTTTTCAGCATGTCCGTATTAGCTAAACCAAGACTTTGAAGATGTTCTGAACCAGCTAAAATGACGCTTCAAGGCACGATG GTAAACAGAGGCGTATCAACGCTAACCGGTTTTCCATCTTCAGCTAGTAGTTCAGTGATGGTTCCTGATTTCTCAGCCTCAATCTC ATTCATTAGTTTCATAGCTTCGATAATGCAAACAACTTGACCCTTCTGCACCTTATCACCAACCTTGACAAAAGGGGGTTCACCGG GTCCAGGAGATCTGTAGAAAGTACCAGCCATAGGACTCTTGAGTGGAGGATGAGAAGAGGCAGGTGGGGTTGCTGGTTTTGCTGTT TCAGGGGCTGAGGAGGGAGTAGGAGAAGCAAGAGGAAGAGCAGCTGGTTGAGATGGAGGCATTGGATATCCTGTAACTGGAGGAGG CATGGAGTGGTAAACTGGAGCTGTTGGTGGAAGTTGCTGCTGCTGTAAAGCTTCCTTCTTGCGAATAACAATCTCACAGTCGAGCT GCTTCAGTTCAAGTTCCACTATATCTCTTGAATCCACAAGCTTAAGAAGACCAGAGACTTTGGCCATAAAGTCAGAGAGTTCGGCA GGTTCAGGAACATTGCTCTTCACTTTCCCGTTACCGTTTGTCATTGGGGTTGAGTTAGAGACAACCTCATTGGTTGTTGCACGCAA CTTCCAGATTGTAGATTGATTCTGAGATACATCGGAGGGAAAGGATACGCCATTGAGTTGCGGCTGCCGTCGGGTTCCAGGAAAAG ATCCGAACCGGTGGTTCGGAGCACAGATCTTGGCGTAAGATACAGAAAATGACGCCATTGTTGAGACAGATGAAATGCAGTTGACG ATGAAACCGAGGAAGCTAAGAGAGAGAGAGATAAATAAGAAAAAGGTTGATGGTTATTTTTCGGGTAAAGGAATCTTGATTTCGAT GGTTACGAAGAAAACCAAACAACTATC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002871669 hypothetical protein ARALYDRAFT_909527 [Arabidopsis lyrata subsp. lyrata]	1036	2e-110
NP_568316 biotin carboxyl carrier protein of acetyl-CoA carboxylase 2 [Arabidopsis thaliana]	1018	3e-108
CAA62264 Biotin carboxyl carrier protein [Brassica napus]	995	1e-105
AAS46758 biotin carboxyl carrier protein [Brassica napus]	989	6e-105
CAA62265 Biotin carboxyl carrier protein [Brassica napus]	948	4e-100

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LLC1 Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic	1018	1e-109
Q42533 Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic	544	1e-054
Q42783 Biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic	539	4e-054
P37799 Biotin carboxyl carrier protein of acetyl-CoA carboxylase	264	3e-022
P0ABE0 Biotin carboxyl carrier protein of acetyl-CoA carboxylase	252	8e-021

TrEMBL top hits (Blast detail)	Score	e value
Q39349 Biotin carboxyl carrier protein	995	9e-106
Q6QIW2 Biotin carboxyl carrier protein	989	4e-105
Q39350 Biotin carboxyl carrier protein	948	2e-100
Q39351 Biotin carboxyl carrier protein (Fragment)	644	4e-065
B9SJD0 Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP2)	640	1e-064

Arabidopsis top hits (Blast detail)	Score	e value
AT5G15530.1 BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2); biotin binding	1019	8e-111
AT5G16390.1 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase/ biotin binding	545	7e-056
AT5G16390.2 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase/ biotin binding	444	4e-044
AT1G68690.1 ATP binding / protein kinase/ protein serine/threonine kinase	127	2e-007
AT4G18670.1 protein binding / structural constituent of cell wall	123	6e-007

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	9			90%


8	1			10%

Unigene Members	Member information