RadishBase

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Information for unigene UN14420

FASTA Sequence

Unigene ID: UN14420	Length: 1135		SNP
GGGCTCTCTCTCGAAGAAAGGCAAAACACAGTTTGGGTCAAAACTTTCCATTTTATTACACAGAAACAAAATTTCGTAGATCGTTA AAAGAAGGAAACCAAATCCCCTCTCTCCCCCAATTCAATTCAAGCTTTTCGTCCTTCGTCAGATCTGATCCCCCCCCTCGATTCAT CCGCCATTTTTCGAAAGGGGTGTTGATTGGTGCTGCTAAATCGGGAAAGAAAAATGGCGAGTAGGATGGATCAGGAATACGATTAT TTGTTTAAGATCGTGTTGATCGGAGACTCGGGTGTGGGGAAATCGAACATCTTGTCCAGATTCACGAGGAATGAGTTTTGCTTGGA ATCCAAATCCACCATCGGTGTCGAATTCGCCACCAGAACTACTCAGGTGGAAGGAAAGACGATCAAAGCTCAGATCTGGGACACTG CAGGCCAGGAGAGGTACAGAGCCATCACCAGCGCTTACTACAGAGGCGCGGTGGGTGCACTCCTTGTCTACGACATCACCAAGAGG CAGACATTTGACAACGCCCTGAGGTGGCTCCGCGAACTCAGAGACCATGCTGATTCCAACATCGTCATCATGATGGCTGGGAACAA ATCCGATCTCAACCACCTGAGATCCGTTGCTGAGGAGGATGGTCAGAACCTGGCCGAGAAGGAAGGTCTCTCTTTCCTCGAGACGT CTGCCCTCGAAGCCACAAACGTGGAGAAAGCGTTTCAGACCATCTTGGGAGAGATCTACCACATCATAAGCAAGAAGGCACTGGCT GCACAAGAAGCAGCTGCAGCTAACTCCGCGATTCCGGGGCAGGGAACTACGATTAACGTCGATGACACGTCTGGAGGCGTGAAACG AGGTTGCTGCTCTACCTAAAACGAAACGGTAATAATATATGTTTTCTGGCTTATTATCCCAAGATTCAAAACTTTTGTTTTCTGGC TTATTCCTTATCCCAAGATTCGAACTTTTGTTTTCATTGACTCATCTTTCATTTCAACTTTTGGCTCATGCAAGACCATGTAGAAT ACTTGTCAACTTACTCTGTTTTTTATTTTTTTATGTGCTCTTCGGCTGTGTTCATTTTAAAAGCTTGTGAGATTCTGTATTCAGTA AAGCTTTGTTGGTAGTA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_190267 Ras-related protein RABA2c [Arabidopsis thaliana]	1060	4e-113
NP_200723 RAB GTPase homolog A2D [Arabidopsis thaliana]	1027	2e-109
XP_002866318 hypothetical protein ARALYDRAFT_919138 [Arabidopsis lyrata subsp. lyrata]	1027	2e-109
XP_002520494 protein with unknown function [Ricinus communis]	973	4e-103
XP_002307838 predicted protein [Populus trichocarpa]	972	6e-103

Swiss-Prot top hits (Blast detail)	Score	e value
Q96283 Ras-related protein RABA2c	1060	2e-114
Q40193 Ras-related protein Rab11C	969	6e-104
Q39434 Ras-related protein Rab2BV	936	4e-100
Q40523 Ras-related protein Rab11A	935	5e-100
Q40723 Ras-related protein RGP2	861	2e-091

TrEMBL top hits (Blast detail)	Score	e value
Q9FIF9 GTP-binding protein rab11	1027	2e-109
B9S3C5 Putative uncharacterized protein	973	3e-103
B9HBS5 Predicted protein	972	4e-103
B9N3X5 Predicted protein	965	3e-102
C9E9M0 RabA2	965	3e-102

Arabidopsis top hits (Blast detail)	Score	e value
AT3G46830.1 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C); GTP binding	1061	1e-115
AT5G59150.1 ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D); GTP binding	1028	7e-112
AT1G07410.1 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B); GTP binding / GTPase/ protein binding	958	9e-104
AT1G09630.1 ATRAB11C (ARABIDOPSIS RAB GTPASE 11C); GTP binding	818	2e-087
AT5G45750.1 AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding	733	1e-077

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	7			50%


9	4			29%


20	1			7%


8	2			14%

Unigene Members	Member information