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Information for unigene UN14455
| FASTA Sequence |
| Unigene ID: UN14455 | Length: 1849 |
| SNP | GACACTTGACATTGGTTTTCTTCCAATCTACCTCTGAAATTTTCGTTCTCACTCTCAAAATGAAGTTTTCGATGCGTTTGATCTCA
GCTGTTCTCCTCTTGTTCATGATATTCGTTGCTACAGGGATGGGTCCAATAACAGTGGAGGCACGCACATGTGAGTCACAGAGCCA
TAGGTTCAAGGGTCCATGTGTGAGCGAAAACAACTGTGCAAACGTGTGCCACAACGAAGGTTTTGGCGGAGGCAAATGCCGTGGAC
TTCGTCGTAGGTGCTTCTGCAATCAGAAATTTGGAAACCCTAATTCGATCTCCAGATCTAAATCAACTCTGCTTAGTTCTCAGTAT
GGAAGACCCCAGAGATAACGAAGCCTACGAGGAGGAGCTTCTGGACTATGAGGAAGAGGACGAGAAAGCTCCAGATTCTGCTACTA
AAGTTAACGGCGAAGCCGTGAAGAAAGGTTACGTGGGGATACACAGTTCAGGATTCAGAGACTTCCTTTTGAAGCCGGAGCTTCTC
CGTGCTATTGTTGACTCTGGTTTTGAACATCCATCCGAAGTGCAACACGAATGTATCCCTCAAGCTATCTTGGGCATGGATGTTAT
CTGCCAAGCAAAATCTGGTATGGGAAAGACTGCTGTCTTTGTTCTTTCCACTCTGCAACAGATCGAGCCAACTCCTGGCCAGGTGT
CTGCACTTATCCTGTGCCATACTAGAGAGTTAGCTTACCAGATCTGCAATGAGTTCGTGCGATTCAGTACCTATCTGCCTGATACT
AAGGTTTCAGTGTTCTATGGTGGAGTCAACAATAAAATTCACAAAGACTTGCTTAAGAATGAATGTCCTCACATTGTTGTTGGAAC
ACCTGGTCGTGTGCTTGGACTCGCCAGGGACAAAGATCTCTCTTTGAAGAATGTGAGGCATTTTATTCTTGGCGAGTGTGATAAAA
TGCTTGAGTCCCTTGACATGCGAAGGGATGTGCAGAGATTTTCAAGATGACTCCTCACGACAAACAAGTTATGATGTTCTCAGCAA
CTCTCAGCAAAGAGATACGCCCAGTCTGCAAGAAGTTTATGCAAGATCCAATGGAAATTTATGTTGATGATGAAGCCAAATTGACT
CTGCATGGGCTTGTCCAGCACTACATCAAACTGGGCGAGATGGAGAAAAACCGCAAGCTGAATGACCTTCTTGACGCATTGGACTT
CAATCAAGTTGTCATATTTGTGAAGAGCGTCAGCAGAGCTGGGGAGCTGAACAAGCTGCTTATCGAATGTAACTTCCCCTCAATAT
GCATTCACTCTGGCATGTCTCAGGAAGAGAGGCTGACTCACTACAAAAGTTTCAAGGAAGGGCACAAGAGAATTCTGGTGGCGACA
GACTTGGTAGGGAGAGGCATTGACATTGAGCGTGTCAACATTGTCATCAACTATGACATGCCAGATTCTGCTGATACATACCTTCA
CAGGGTTGGAAGAGCTGGTAGGTTTGGAACAAAGGGTCTTGCAATCACATTTGTGGCATCAGCTTCAGACTCGGAAGTTCTTAACC
AGGTACAAGCTAGGTTCGAGGTTGATATCAAGCAACTTCCTGAGAATATTGATACTTCTACATACATGCCGTCTTAAAGCAGCATC
GTCTCTCAGGAAGAACCTCTCCAGATTACAACTATCATCCTCCCCTCTATATTTTAGCTTTTTTTCTCTGTGGACAAGCTTCCGTT
TAGACCGTTTGTAACTCTTCAGTTATAGAGATCGAGTGACTCTCCAATCACATTTTGTTAAAGTTTGTTCTGTTTTGTAAAAGATA
TTTTTATGTTTATCTCAGGAATTAATCTTGGTTTTTAGTGGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_568245 DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana] | 1062 | 4e-113 |
| NP_850807 DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana] | 1062 | 4e-113 |
| XP_002871462 hypothetical protein ARALYDRAFT_487950 [Arabidopsis lyrata subsp. lyrata] | 1062 | 4e-113 |
| XP_002873498 hypothetical protein ARALYDRAFT_909079 [Arabidopsis lyrata subsp. lyrata] | 1059 | 9e-113 |
| CAA09205 RNA helicase [Arabidopsis thaliana] | 1058 | 1e-112 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LFN6 DEAD-box ATP-dependent RNA helicase 56 | 1062 | 2e-114 |
| Q56XG6 DEAD-box ATP-dependent RNA helicase 15 | 1056 | 9e-114 |
| Q5JK84 DEAD-box ATP-dependent RNA helicase 15 | 1023 | 6e-110 |
| Q0JM17 DEAD-box ATP-dependent RNA helicase 56 | 1023 | 6e-110 |
| O13792 ATP-dependent RNA helicase uap56 | 838 | 2e-088 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9SV98 Predicted protein | 1043 | 4e-111 |
| B9HA46 Predicted protein | 1041 | 8e-111 |
| C0PJ26 Putative uncharacterized protein | 1039 | 1e-110 |
| B9IKW5 Predicted protein | 1038 | 2e-110 |
| B9RV50 Dead box ATP-dependent RNA helicase, putative | 1036 | 3e-110 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G11200.1 DEAD/DEAH box helicase, putative | 1063 | 1e-115 |
| AT5G11170.2 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding | 1063 | 1e-115 |
| AT5G11170.1 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding | 1063 | 1e-115 |
| AT5G11200.2 DEAD/DEAH box helicase, putative | 1054 | 1e-114 |
| AT5G11200.3 DEAD/DEAH box helicase, putative | 1054 | 1e-114 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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