RadishBase

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Information for unigene UN14468

FASTA Sequence

Unigene ID: UN14468	Length: 1302	SSR
CGGAAACATAAAATCCTAAATCATCATCAGACAAAGGAAAAGGAACCCATAAACCATAATCATCATATTCATAAAGTTCATAGCTA AGTGAAACGAATCTCACAGATAAAAGGACAAACATAACATAAAAACTAAAAAAACAAAACTAATCTGAAGTGAGACTTTGGATACA AGCATAAATGCCTTTTGTCTCACTTTTCCCAGAATAGATACCATAAAACAAAAGATTCAAAACTTAAAGAGTAGCATAACACAAAT TCATCTCATTATTCATCGTCGCTGTCTTTGCTTTTCTTCTTCTTCTCCTTCTTTTTCTTCTTCTCGCTCTTCTCTGCTGATTCACC ACCACCAGCTTCATCTGTCTCCTTGTCCTTCTTTTTCTTCTTCTTCTTCTCACTCTTCTCTGCTGGTGATTCATCTTCGCCATTAA CCGCAGCAGCAGCTTCATCTGTCTCCTTGCTCTTCTTTTTCTTCTTCTTCTCAGACTTTGGTGTTGCCAACTCTTCTTTATCCTCC TCCTTGTCCTTCTTTTTCTTCTTCTCCTTTTTCTCAGACTTCACCTTCTCTTCAACCTCAACCTCTTTTGTTTTGGCTTTCTTGGT AGACACAGGCGCAGGGCTGTCACTGCTCTCATCAAGCTTACGCTTGCGCACTTCTCCACTCTCAGCCTCAACCTTCTCAGGAGCGG CAGCAGCACCAGCGACCATAGCATCACCACCAGTAGGCAAAACAACATTCCTGCTCCACTCAACAGGCGTTTTCTCATTCGGCTTC CCGTGCTTATCCAACTTCCCATCAGCAATAAGCTTCTTCTTCATCGAAGCTCTAGGCCCCAACCCCCACTTCCTCGGGTAAGTATC TCTATCCATCACCACCCGCTTAATCTTAGCCACCACACCATGGTCACACGTAGCCATCACCGACGTCGTCATCTCAGCGATCCCAA CAGCAATCGCCTCACCTTTAGTCGTCATCAAAACAACCTCAGTACCAACATCAACATCATTCTCAAACCTCAACAACCCAGGAATC ATCAGCTTAGCACCATAGCAAATCGCATTAACAGCAGAGTCCTTCACAACAAGCCTCTTGTAACTCGTCAATATCACCTCAAGAGG CATAATCACCCTCCTGAGATAACTCTCATCCTTGTAGTTATCATACATCCACTGAGCATCCATCACATCATGCATCGTAACCATGT TATCATTCTCCCCCAATATCCCAGACCTAACCCTCCTAAGCTCTTGCATATGCCCACCGACACCGAGCAACAACCCCAAGTGAACA CACATTGTCCTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_191274 H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana]	1367	1e-148
XP_002878134 hypothetical protein ARALYDRAFT_486159 [Arabidopsis lyrata subsp. lyrata]	1361	6e-148
XP_002270073 PREDICTED: hypothetical protein [Vitis vinifera]	1237	1e-133
BAJ93106 predicted protein [Hordeum vulgare subsp. vulgare]	1145	6e-123
XP_002308911 predicted protein [Populus trichocarpa]	1132	2e-121

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LD90 H/ACA ribonucleoprotein complex subunit 4	1367	5e-150
Q54T81 Probable H/ACA ribonucleoprotein complex subunit 4	923	1e-098
Q5ZJH9 H/ACA ribonucleoprotein complex subunit 4	867	5e-092
O13473 Centromere/microtubule-binding protein CBF5	862	2e-091
O14007 H/ACA ribonucleoprotein complex subunit 4	854	1e-090

TrEMBL top hits (Blast detail)	Score	e value
C0SVF3 Putative uncharacterized protein At3g57150 (Fragment)	1367	8e-149
B9H9F7 Predicted protein	1132	1e-121
C5XFV2 Putative uncharacterized protein Sb03g009870	1126	7e-121
C4JC17 Putative uncharacterized protein	1125	9e-121
A2YP23 Putative uncharacterized protein	1123	1e-120

Arabidopsis top hits (Blast detail)	Score	e value
AT3G57150.1 NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase	1367	4e-151
AT1G56660.1 unknown protein	181	1e-013
AT3G28770.1 unknown protein	177	4e-013
AT5G40340.1 PWWP domain-containing protein	175	7e-013
AT5G41020.1 myb family transcription factor	174	9e-013

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	2			25%


9	3			38%


6	1			13%


8	2			25%

Unigene Members	Member information