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Information for unigene UN14520

FASTA Sequence
Unigene ID: UN14520Length: 980  SNP
GCAAGTTCCTACTAGACGATCAAAGTGGAACCAAAGAGAAATAATTGGATCACGAGGACAATCCACAAAAGATATCATTCAAAACT
AGGGTTTATAACAAATTTAAATAAGTTGAGCTACGCTGCGTAATTTCTTGAACAAGAGTCAATGAAAACTGTAAACAAGGTTGTCC
GAGAGTTTTTTTTTGTGTTTCTCGACTGAAGATTATGAAAGGAAAACTATATCGCATTACCCGTAGACTTCAGTTGAAAAGTCCAG
GGTTTAGCCAGTCCTTGGTGATATCATCAAGATGGTCATCAACATCTGTGACGTCCTTCCATTTCTCAGATGAAATGTAATCTGAC
AAAACTACATTGGCCGAGGGCTCTTTCAAGAGTAGCTTGCTTCCTCCATCTGCTCCAACCACTCTCCAGTTCTTGGAAGCATCTTT
CACACAAAGCTGCATCACAGGGCTTCGATCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTATTCAACAAGAGAATAGGTGCAG
GAGGGAAATAGCGAGAGATGTGATCACCAATGTTCTTAGCCACACCACAGAGATCCACATCATCAAACCTCTCGTTGGCGTGAAAG
TAGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCATGATGAGGGAGATCTCGAGAGGAGGAAGGAGAGCGAGGTT
AGAGTGAAAGAGCGGCACGGAATCGGAGATCTCCACGAGGCCTTCGTCCTTAGGGCTGATTCGACCGACGAGGACTCCGTTGACCG
CCGCCGTCTTGTGACGCAGCGAGTGGAGAACGAGTTTGATGTACGCGTTCTGCGAGATCTCGTACTTCAATTCCCCGTTGTTACTC
CCCATCCCTACCTAACTCGATCGATCGGACGGAGGAGACTCACTGATGATGATTCAGTTCTTAAATCTCCACTCGCTGAGAATTAT
CAAGTCGCGGCGTAATCGAGAGAGACAACGTTCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_568832 uncharacterized protein [Arabidopsis thaliana]10406e-111
AAM64789 unknown [Arabidopsis thaliana]10325e-110
XP_002866119 EMB2731 [Arabidopsis lyrata subsp. lyrata]10309e-110
XP_002522792 Neighbor of COX4, putative [Ricinus communis]7881e-081
CAN78153 hypothetical protein VITISV_040251 [Vitis vinifera]7791e-080

Swiss-Prot top hits (Blast detail)Scoree value
Q9FG71 UPF0172 protein At5g5594010403e-112
Q9DB76 UPF0172 protein FAM158A2482e-020
Q5U1W7 UPF0172 protein FAM158A2463e-020
Q9Y3B6 UPF0172 protein FAM158A2402e-019
Q9W1Y1 UPF0172 protein CG35012365e-019

TrEMBL top hits (Blast detail)Scoree value
Q0WW87 Putative uncharacterized protein At5g5594010404e-111
Q8LBG0 Putative uncharacterized protein10324e-110
B9S9X3 Neighbor of COX4, putative7887e-082
A5APP0 Putative uncharacterized protein7798e-081
B9GFZ6 Predicted protein7771e-080

Arabidopsis top hits (Blast detail)Scoree value
AT5G55940.1 emb2731 (embryo defective 2731)10412e-113
AT5G51620.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: emb2731 (embryo defective 2731) (TAIR:AT5G55940.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).2571e-022
AT5G51620.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: emb2731 (embryo defective 2731) (TAIR:AT5G55940.1); Has 28 Blast hits to 28 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1891e-014
AT5G51620.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: emb2731 (embryo defective 2731) (TAIR:AT5G55940.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1881e-014

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
73  20%
 
112  13%
 
95  33%
 
82  13%
 
63  20%

Unigene MembersMember information