RadishBase

| | | |

Information for unigene UN14545

FASTA Sequence

Unigene ID: UN14545	Length: 1182	SSR	SNP
TTTTTATTAGGGTTCCTTCGTTCGTTCCTAGATTTTGATTTTAACCGGAAATATAAAGTCACTTTCCTCCGGCGATTGTGAGGCAT CCCGAATTAAATCCTCTGTGGGGGAGGTTTGATTGGAAAAAAAGAAGAAATGGAGGTAATCACTCATCCAACACCTCGAACTGTCG AAGAGGTCTTTACTGACTTCAGAGGTCGTCGAGCTGGTCTTATCAAGGCTCTCACTACCGATATGGTGAAGTTTTACCAAACGTGC GATCCTGAGAAAGAGAACTTGTGCCTCTATGGACTTCCTAACGAGACATGGGAGGTTAATCTTCCCGTCGAGGAAGTTCCTCCCGA GCTTCCTGAGCCTGCTCTTGGCATCAACTTCGCTAGAGACGGGATGCAAGAAAAGGACTGGGTGTCTCTGGTCGCTGTTCACAGTG ATTCCTGGCTGCTCTCTGTCGCGTTCTACTTTGGTGCACGTTTTGGGTTTGGTAAGAACGAGAGGAAGAAGCTCTTCCAGATGATA AACGAGCTCCCAACCATTTTCGAGATTGTGACAGGCAATGCAAAGCAATCCAAGGATCTATCTGCCAACAACAACAACAGTAGCAA AAGCAAATCCAACGGCTTGAAGGTTCCAAAGATGTCATCTCCACCGCCTAAAGAAGAAGACGAGAGTGAGGACGAGGACGAAGACG ACGAGCAAGGTGCGGTGTGTGGCGCTTGTGGAGACAGTGACGGTACAGATGAGTTCTGGATTTGCTGCGACGCGTGTGAGAAATGG TTCCATGGGAAATGTGTGAAGATAACACCTGCAAAAGCGGAACACATCAAGCATTACAAATGCCCAACTTGCAGTAACAAGAGAGC CAGGCCTTGATGATGCCTAAGTGAGCAAAGGTAAAAGAGTTAGGAGGAAGCTGTGAAAGGAGGAGGAGAAGTTCCCAGTTTATTGA ACGAAAAGGCCAAAGATAAATGGGGTTTTAGAAGATGTAAGAAGGTTTAAAAAAACACGTTTGCTTGCTTAGTCTTTGTTTATGGA TTCAGACTATTTACTATTGATGTGATGTTTTTCTTTGGATGCTTTGTTGTTGTTGTTGTTAATGTCAATGCTACTACTGATTTGGC CTCTGCTTAAGTCTGTTTAAATTATCCTAGACTCCTGCTTAAATATGCTTAAGGTTGTTTTCAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_001189502 protein alfin-like 6 [Arabidopsis thaliana]	1230	7e-133
NP_178351 protein alfin-like 6 [Arabidopsis thaliana]	1210	2e-130
AAM65374 putative PHD-type zinc finger protein [Arabidopsis thaliana]	1210	2e-130
XP_002875129 PHD finger family protein [Arabidopsis lyrata subsp. lyrata]	1200	2e-129
XP_002892811 PHD finger family protein [Arabidopsis lyrata subsp. lyrata]	1117	9e-120

Swiss-Prot top hits (Blast detail)	Score	e value
O81488 PHD finger protein At5g26210	927	4e-099
Q9W0T1 Nucleosome-remodeling factor subunit NURF301	142	5e-008

TrEMBL top hits (Blast detail)	Score	e value
Q8LAH0 Putative PHD-type zinc finger protein	1210	1e-130
Q8S8M9 Putative PHD-type zinc finger protein	1210	1e-130
Q8LA16 At1g14510	1116	8e-120
Q06A75 PHD5	1108	7e-119
C9EID2 Putative alfin-like transcription factor	1029	1e-109

Arabidopsis top hits (Blast detail)	Score	e value
AT2G02470.1 AL6 (ALFIN-LIKE 6); DNA binding / methylated histone residue binding	1211	5e-133
AT1G14510.1 AL7 (ALFIN-LIKE 7); DNA binding / methylated histone residue binding	1116	5e-122
AT3G42790.1 AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding	963	3e-104
AT5G20510.1 AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding	950	8e-103
AT5G26210.1 AL4 (ALFIN-LIKE 4); DNA binding / methylated histone residue binding	927	4e-100

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	5			33%


12	5			33%


6	3			20%


8	2			13%

Unigene Members	Member information