RadishBase

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Information for unigene UN14556

FASTA Sequence

Unigene ID: UN14556	Length: 1490	SSR
GGACTCTAAGCAGCAGCTTCTTCCCTCTTGGTCTAATCCGAATCGAAATCGAAATCGAAATCAAAAAAAGCACAAAAGAGACATGA GTGAGGATGAAGAAGACCAATCTCCACCACCTTCGGATCTACGGTCGCAACAACAACAACAACGACCACCTTGCTCGCCCAACAAA TCTCGGAACTGCATCTCCTCCTCCTCTCAGACTTTCCCCGACCACGTCCTGGAGAACGTGCTGGAGAACGTGCTACAGTTCCTGGA ATCAAGAACCGACCGAAACGCAGCGTCTCTGGTCTGCAAATTGTGGTGGAAAGTGGAGGGTCTGACTCGATCGGAGGTTTTCATAG GCAACTGTTACGCGCTTTCTCCGACCAGGTTAACTCAGAGATTCAAGCGTGTTAGGTCTCTGCTCCTCAAAGGGAAACCTAGGTTC GCTGATTTCAATCTCATGCCTCCTGATTGGGGTGCTAACTTCGCTCCTTGGGTCTCCACCATGGCTAAAGCTTACCCTTGGCTCGA GAAGGTCGATTTGAAGCGGATCTTTGTTTCTGATGACGATCTTGCCCTTCTCGCTCACTCCTTCCCTGGTTTCAAAGAGCTCATCT TGGTTTGCTGTGAAGGGTTTGGAACTAGTGGTATCGCTGTCGTTGCCAACAAGTGCAGAAAGCTTAAAGTGCTTGATCTGATCGAG TCAGAGTGACAGACGATGAAGTTGATTGGGATTTCATGTTTCCCAGAGGATGTCACTTGTTTGGAATTTTTAGCATTTGACTGTGT GGAAGCTCCTATCAATTTCAAGGCCCTTGAAGCTCTTGTTGTTAGGTCACCTTTCTTGAGGAAACTTAGGCTCAACAGGTTTGTGT CTCTAGAGGAGGTGCACCGCTTGCTGCTTGAGCTCCCCAGCTCACCAGTCTTGGCACTGGCTCCTTTAAACATGATAATCAGTCCG AGCAAGAGCAAGAACCCGATTATGCCGCTGCTTTCCGTGCTTGTAAATCTGTAGTCTGCCTTTCGGGTTTCAGGGAGTTAATGCCT GAGTACCTTCCTGCTATCTTACCCGTCTGCGCCAATCTTACCTCTCTCAATTTCAGTTATGCTAACATTTCTCCTGACATGTTTAA GCCCATCATCCACACTTGCCACAAACTCCAGGTTTTCTGGGCTCTGGATTCGATATGTGATGAAGGACTGCAGGCAGTTGCTGCGA CTTGCAAGGAACTCCGTGAGCTCCGGATCTTCCCTTTTGATCCCCGGGAAGACAGTGAAGGTCCTGTCTCTGAATTAGGCCTCCAA GCAATCTCCGAGGGTTGTAGAAAACTTGAATCTGTTCTCTACTTCTGCCAGCGCATGACTAATGCCGCCCTGATAGCCACGTCACA TAACTGTCCTGAGCTTACTGTGTTCAGCTCTGCATAATGGGTCGACATAGCCTGACATGTGACAGAAAGCTATGGACGAGGGTTTG GTGCATTGTTAAAACTGCAGAACTACTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_568718 transport inhibitor response 1-like protein [Arabidopsis thaliana]	1152	1e-123
XP_002865768 auxin F-box protein 5 [Arabidopsis lyrata subsp. lyrata]	1135	1e-121
NP_567702 F-box protein FBX14 [Arabidopsis thaliana]	969	2e-102
CAB45074 transport inhibitor response-like protein [Arabidopsis thaliana]	964	7e-102
XP_002867664 hypothetical protein ARALYDRAFT_492408 [Arabidopsis lyrata subsp. lyrata]	958	4e-101

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LTX2 Transport inhibitor response 1-like protein	1152	5e-125
Q8RWQ8 F-box protein FBX14	969	8e-104
Q7XVM8 Transport inhibitor response 1-like protein Os04g0395600	582	6e-059
Q9LW29 Protein AUXIN SIGNALING F-BOX 2	566	4e-057
Q570C0 Protein TRANSPORT INHIBITOR RESPONSE 1	566	4e-057

TrEMBL top hits (Blast detail)	Score	e value
B9GV20 F-box family protein	917	1e-096
B9RJT7 TRANSPORT INHIBITOR RESPONSE 1 protein, putative	894	6e-094
B9H6Y0 F-box family protein	891	1e-093
Q9AUH6 F-box containing protein TIR1	882	2e-092
A5AZ08 Putative uncharacterized protein	857	1e-089

Arabidopsis top hits (Blast detail)	Score	e value
AT5G49980.1 AFB5 (Auxin F-Box protein 5); ubiquitin-protein ligase	1152	4e-126
AT4G24390.2 F-box family protein (FBX14)	969	7e-105
AT4G24390.1 F-box family protein (FBX14)	969	7e-105
AT3G62980.1 TIR1 (TRANSPORT INHIBITOR RESPONSE 1); auxin binding / protein binding / ubiquitin-protein ligase	566	4e-058
AT3G26810.1 AFB2 (AUXIN SIGNALING F-BOX 2); auxin binding / ubiquitin-protein ligase	566	4e-058

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	1			25%


11	2			50%


6	1			25%

Unigene Members	Member information