RadishBase

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Information for unigene UN14583

FASTA Sequence

Unigene ID: UN14583	Length: 1541		SNP
GAAAGAAAAAAAAACATTGTTTTTTACCAATTGGCTCAAAGAATCTCTTAGAATAATATCCAATCCAAAAAGACGATGAATCCAAA GCCCACACGTCTGTTCGTGGATGTGGTCCAAGGTGGGCCCTACTTTTGGATCGGATCATGGCAGAAAGACGACAAAAAGAGAGTAC TGAGATCTAAAATTGAAAGACATTGTGATTCCAAGATCTTTTGTGCATGTGCACGTGACTGTGTGTGACACAGAGTGCAGCAGCAC GTGACATCTTAAGAATCCACCCAAAACAAGTTTGGTGACAAGGTTTTCTTTTCTCAAAGAAAATAAAAGACATGAAAAACACTGCA ACAAAAGGACAAGAACTAGAAACAAACAAAAAGCAAACTGAGAAGAAATCTGCTCTGGCCAGCTTCACTCGACCATCTCTCATTCT GGCTTCCGAGCCAAGAAGAAGTACATTGGCGTGAATATCTCCCTCCTTCCACCGTCGACTAATCCTTCTGCGGCCTTCTCCAGAAA ATCTGAAACCCTTTGGCTTCCTTTAGGCGCGAGTCTTATGTACTCAAGGACCTTGACCATGTTTTTAGTTATGAACCGTCCAACAG CTGTTAGGCGGAAGCTACTGAGCGAAAAGTGGTTTTTGTCCAGAGGTAAGTACCATGGGACTGGCGAGTCCTCCGCCAGATCCTTT TCCCATATCACTTCAAAACCGGCCTGCTTCAAGGCTTCGAGGCATTTTGAAGTCAGCCTAATGTCAGGGAGACCATCTCCGATCTC TATCTCTGCCTTTATTTTCTGATGCTGGGCGTTAGCAGGGTCAAATGCATCAGTCATGCACCACTCATAGGCAGCAAAACATTGTC CGGGCTTTAGCACTCTGAAGATCTCTTTGTAGCATCCATATGCATCAGGTGCGTGGCAGGTTGCCTCTATGGCATAAACAGCATCA AAAGTGTTTTCAGGGAATGGCATCTTCATGAAGTCAGCCTTGACAAAGTTGCATGTTTTGTCGACACCTGCAAGACGGTTTAGTTC CTTGCCTCTGGTGATTTGATATTCGTTATTGTTGAGCCCGGTAACAGATGAATTGCTGAATCGTGCAATTTCTCTCAGTGGTCCAC CAATTCCACATCCTACATCCAGCACCTTTTGTCCAGGTTTAACGCCAAGCTGAAGAGCAAGAAAGTGCTCGTGACGTTTGATACTC TCTCGAAGTGATTCTCCCTTCCATCTGTGTGCAAAGTGGAAGGACTCTCCCCATCCATACTCATAAAAGCTAGTAGCAAGGTCATA GTATTTATTAACCATGTCAGTGTAGTTAGCTTTTCGCTCTTCCTCGTTACCTCCATGAAAGACATGATATTGCTCATACTTTTCGA CGGAGGAGAGAACATCGGATTTATCGATAGTTCCGCCAAGGTTGGAGGCGAGATCCAGAGAGCCAGACTTCGACATTATGCACGGA GGAGATAAAGGTTACGAATCGGAGAGTGGTGGGGAAGAGCTCAGAGAGGTCCCTGACTACTTGGCTTTCGCTTATATCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002873624 cephalopod [Arabidopsis lyrata subsp. lyrata]	1731	9e-191
AAM53553 cephalopod [Arabidopsis thaliana]	1723	7e-190
NP_196875 cycloartenol-c-24-methyltransferase [Arabidopsis thaliana]	1721	1e-189
AAB04057 S-adenosyl-L-methionine:delta24-sterol-C-methyltransferase [Glycine max]	1624	2e-178
ACU21534 unknown [Glycine max]	1619	8e-178

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LM02 Cycloartenol-C-24-methyltransferase	1721	5e-191
Q6ZIX2 Cycloartenol-C-24-methyltransferase 1	1498	4e-165
Q54I98 Probable cycloartenol-C-24-methyltransferase 1	906	2e-096
Q759S7 Sterol 24-C-methyltransferase	832	6e-088
Q6CYB3 Sterol 24-C-methyltransferase	827	2e-087

TrEMBL top hits (Blast detail)	Score	e value
Q43445 S-adenosyl-L-methionine:delta24-sterol-C-methyltransferase	1624	2e-178
C6TI82 Putative uncharacterized protein	1619	6e-178
C6TAL0 Putative uncharacterized protein	1608	1e-176
Q2QDF7 24-sterol C-methyltransferase	1601	7e-176
B7FHU0 Putative uncharacterized protein	1580	2e-173

Arabidopsis top hits (Blast detail)	Score	e value
AT5G13710.1 SMT1 (STEROL METHYLTRANSFERASE 1); sterol 24-C-methyltransferase	1722	4e-192
AT5G13710.2 SMT1 (STEROL METHYLTRANSFERASE 1); sterol 24-C-methyltransferase	1722	4e-192
AT1G76090.1 SMT3 (STEROL METHYLTRANSFERASE 3); S-adenosylmethionine-dependent methyltransferase/ sterol 24-C-methyltransferase	594	2e-061
AT1G20330.1 SMT2 (STEROL METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase	577	2e-059
AT1G48600.2 phosphoethanolamine N-methyltransferase 2, putative (NMT2)	175	9e-013

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	10			42%


12	1			4%


8	5			21%


7	7			29%


6	1			4%

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