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Information for unigene UN14618
| FASTA Sequence |
| Unigene ID: UN14618 | Length: 1591 |
SSR | | GGATTTAATAAACAGAGCAGAAAAACAGAGTCTTTCATCTTCTTCTTCTGGGGAGAGAGAGAGAGAGAGCTCTAACAATGGCGAAC
TTGGTCTTATCCGAATGTGGCATAAGACCTCTCCCCAGAATCTACACCACACCCAGATCCACTTTCCTCTCTAACACCAACACCAC
CTTCAAACTCAGACCATCCCCTTCTTCTTCCACTTCTCTCTCGTTTCGTCTGAATGGGTTCTCCACTAAGAACTGGGCGTTGAATG
TAACCACGCCTTTAACAGTCGACTCGTCTCCTCCTCCTGTCGAGGCGGAACACGAAACGCAGAGATTCGACCCAGGAGCGCCTCCT
CCGTTCAACTTAGCTGATATCAGAGCAGCTATTCCCAAGCATTGTTGGGTTAAGAATCCATGGAAGTCCATGAGCTACGTTGTGAG
AGACGTCGCCATTGTGTTTGCATTGGCTGCTGGAGCTGCTTACCTCAACAGTTGGCTTGTCTGGCCTCTCTATTGGCTTGCTCAAG
GAACCATGTTCTGGGCTCTCTTTGTTCTTGGCCATGACTGTGGACATGGTAGCTTCTCAAATGATCCGAGGTTGAACAGTGTTGTT
GGTCACCTTCTTCATTCCTCAATCCTAGTCCCTTACCATGGCTGGAGAATTAGCCACAGGACTCACCACCAGAACCATGGACATGT
TGAGAACGATGAATCTTGGCATCCTATGTCTGAGAAAATCTTCAAGACTTTGGATAGACCCACTCGGTTCTTTAGATTCACACTGC
CTCTCGTGATGCTCGCGTACCCTTTCTACTTGTGGGCTCGAAGCCCGGGGAAAAAGGGTTCTCATTACCATCCGGACAGTGATTTG
TTCCTCCCTAAAGAGAAGAAGGATGTTCTTACTTCTACAGCTTGTTGGACTGCAATGGCTGCTCTGCTTGTGTGTCTCAACTTTGT
GATGGGTCCAATGCAAATGCTCAAACTCTATGGAATCCCTTACTGGATAAATGTAATGTGGTTGGACTTTGTGACTTACCTGCATC
ATCATGGTCATGAAGATAAGCTCCCTTGGTACCGTGGGAAGGAATGGAGTTACTTGAGAGGAGGGCTTACAACATTGGATCGTGAC
TACGGAGTGATCAATAACATTCATCACGACATTGGAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCTAGT
AGAAGCCACAGAAGCGGCTAAACCAGTATTAGGCAAGTATTACAGGGAGCCTGATAAGTCTGGACCTTTGCCATTACATTTACTGG
GAATCTTAGCAAAAAGTATGAAAGAAGATCATTATGTGAGCGACCAAGGAGATGTTGTATACTATAAAGCAGATCCTAATCTATAT
GGAGAGGTCAAAGTAACAGCAGATTAAAATGAAGCAAGCAGAAAGTGATAGAGAAGCTTTTTCTATTTCTGACCAGCTGATTTTTT
TGCTTATTAACGTCAATCTATTGTGTTACTACTACCTCCAGAGAGTTAGTATCTCTGAATACAATCAGATGGAAACGACAAATTTG
TTTTCAGTACTGAAGTTATTTATAAGATACATTGTATTGTCTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| CAB85467 chloroplast omega-3 fatty acid desaturase [Brassica juncea] | 2263 | 2e-252 |
| ACS26170 chloroplast fatty acid desaturase 7 [Brassica napus] | 2234 | 4e-249 |
| ABK91880 omega-3 fatty acid desaturase [Descurainia sophia] | 2201 | 3e-245 |
| AAT02410 chloroplast omega-3 fatty acid desaturase [Brassica napus] | 2192 | 3e-244 |
| XP_002882717 hypothetical protein ARALYDRAFT_478456 [Arabidopsis lyrata subsp. lyrata] | 2162 | 1e-240 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P46310 Omega-3 fatty acid desaturase, chloroplastic | 2168 | 8e-243 |
| P48618 Omega-3 fatty acid desaturase, chloroplastic (Fragment) | 2071 | 1e-231 |
| P48622 Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic | 1975 | 2e-220 |
| P48619 Omega-3 fatty acid desaturase, chloroplastic | 1747 | 5e-194 |
| P48620 Omega-3 fatty acid desaturase, chloroplastic | 1723 | 3e-191 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9M4D4 Chloroplast omega-3 fatty acid desaturase | 2263 | 1e-252 |
| C5J3R0 Chloroplast fatty acid desaturase 7 | 2234 | 3e-249 |
| A1E436 Omega-3 fatty acid desaturase | 2201 | 2e-245 |
| Q6PN70 Chloroplast omega-3 fatty acid desaturase | 2192 | 2e-244 |
| Q94EW6 AT3g11170/F9F8_4 | 2144 | 8e-239 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G11170.1 FAD7 (FATTY ACID DESATURASE 7); omega-3 fatty acid desaturase | 2169 | 5e-244 |
| AT5G05580.1 FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase | 1983 | 2e-222 |
| AT2G29980.1 FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase | 1476 | 1e-163 |
| AT2G29980.2 FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase | 1030 | 6e-112 |
| AT3G12120.1 FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase/ omega-6 fatty acid desaturase | 572 | 8e-059 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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