 |
Information for unigene UN14711
| FASTA Sequence |
| Unigene ID: UN14711 | Length: 1568 |
SSR | | AGTCCGAAAAGTCACATTTCTACGATCCCAAACATAACAGCGATGAGAAGAACAATACAGACACAAAGACATTTAGACTACTAACG
TCCCATATCACAATAATTTTAGCCAAAATGTCAAAATGGATAATTTAGATTATTGAAAAAAACATAGCTTCTTAAAAACAAAGACG
ACCAGAGACAACAATAGAAAGATCAATGGAAAATATCTTCTTTTGTTCTTCCACCATATATCATCTTCCTCATAACTTATTGTTGT
ACCAGAACACACCTTTCTTCTCACCTTGCCTGTCAGGCTCTACATAGATACACTCCTTCGCCTCCCTCCACATCGCCTTAAACACT
GGCGTCCCATCGAACTGGTAATAATCCCCCAGTATCGGTTTTATCGCCTTGGTAGCTTCCATCGCGTGGTAGTGCGGCATCGTGGA
AAACAGGTGATGCGCCACGTGCGTGTCCGTGATATTGTGGAAGACCTTGTTCAAGATTCCGTAGTCTCTGTCCACGGTAGCCAAGG
CTCCCCTCAACCAATCCCACTCCGAGGAGTCGTAGTGAGGCAGAGAAGGGTGCGTGTGCTGCAAGTAAGTGATCAAGACTAAGAAC
CCGTTGACAATCAGAAGCGGAACCCCGTAGAGGCAGACCATCGAGGCCAGACCCTGAGCAGCGGCGTAACGGTAGAGACCGTAGCA
GACGGCGAGGATACCGGCGTCGGAGACGTATATCTGGAGGCGTTCGCGGTCGTTGTAGATGGGAGCGTTGGGGTGGAAATGGCAAG
CAAAGCCAACGTCGTAAGGCCTGCCCGAGACGTTGAAGGCCAAGTACAAGGGCCAGCCGAGGGTGAACTGGACGGTTAGCATGACG
GTGCGTCCGAGAGGGTTGTTGAGGTACTTGCCGTACCACTTGATGTCAGACTTCTTCTTGGGGACGAAGACTTCGTCTCTCTCGAG
GGAGCCGGTGTTGGAATGATGGCGTCGGTGACTGTACTTCCAGGAGAAGTAAGGGACGAGGAGGAAAGAGTGGAAGATGAGACCGA
CGGTGTCGTCTAGCCACTGGTAGTCGCTGAAGGCGTGGTGGCCGCACTCGTGAGCTATGACCCAGACGCCGGTTAGGACGCAGCCT
TGGCAGGCCCAGTAGAGAGGCCAGGCGAAGTAGGAGAGAGGGTGAGGGAGGAGAGGGAAGTAAGTGGTGGCGACGTAGTAGAAGCA
GGAGGCTATGATGATGTCCCAGATGAGGTAGGAGAATGAGCGAGGGATGGAGCGTTTGAAACAGTGCGGTGGGATCGCTTTCTTGA
GCTGTCCTACAGTGAAGGGAGGTGTCTCGCAGGGTACGCGTTTGAGGGTTTCGGTTTCTGACTTCTTGGGAGAAGGAGATACCTGC
ATTCTTCCACCTGCACCCATTTTGTTTTCTTCAGCTGACGTAGGGGGGGATAGAGATTTAACGTTAATAACGATGAACCCTACGAA
GAAGCTCCTCCGCAAACTCTCTCTCTACCTTCTCTCTCTCCTTTCTATCTCTCTCTCTCTTTGGTAATGAAACTCTCTCTCTGGTT
TCTGGTCAGAAGGAAAATCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAD19742 delta-12 desaturase [Brassica carinata] | 2092 | 1e-232 |
| ACN53522 fatty acid desaturase 2 [Brassica juncea] | 2092 | 1e-232 |
| ACP39502 delta-12 oleate desaturase [Brassica napus] | 2092 | 1e-232 |
| CAD30827 fatty acid desaturase 2 [Brassica rapa] | 2087 | 5e-232 |
| ACP39504 delta-12 oleate desaturase [Brassica napus] | 2087 | 5e-232 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q39287 Omega-6 fatty acid desaturase, endoplasmic reticulum | 2073 | 8e-232 |
| P46313 Omega-6 fatty acid desaturase, endoplasmic reticulum | 1942 | 1e-216 |
| P48631 Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 | 1671 | 3e-185 |
| P48630 Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 | 1536 | 2e-169 |
| O81931 Delta(12) fatty acid dehydrogenase | 1275 | 3e-139 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C0LEJ5 Fatty acid desaturase 2 | 2092 | 8e-233 |
| C3W518 Delta-12 oleate desaturase | 2092 | 8e-233 |
| Q9ZPI2 Delta-12 desaturase | 2092 | 8e-233 |
| C3W519 Delta-12 oleate desaturase | 2087 | 3e-232 |
| C3W520 Delta-12 oleate desaturase | 2087 | 3e-232 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G12120.1 FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase/ omega-6 fatty acid desaturase | 1943 | 9e-218 |
| AT3G12120.2 FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase/ omega-6 fatty acid desaturase | 1943 | 9e-218 |
| AT2G29980.1 FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase | 606 | 9e-063 |
| AT5G05580.1 FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase | 553 | 1e-056 |
| AT3G11170.1 FAD7 (FATTY ACID DESATURASE 7); omega-3 fatty acid desaturase | 546 | 8e-056 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
