RadishBase

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Information for unigene UN14877

FASTA Sequence

Unigene ID: UN14877	Length: 807	SSR
GGACATTAAACTAGCGCCGCGCGGAGTGAGAGCGAGAGCGAAAAAGGCAGAGAGAGAGAGAGACAAGAAGGATGTTCTTCCACATA GTATTGGAGCGAAACGTGCAATTACATCCTCGATTCTTTGGTCGCAACCTTCGTGAAAATCTCGTCTCTAAGCTCATGAAAGATGT CGAGGGCACTTGCAGTGGGCGACATGGGTTTGTAGTGGCGATAACAGGAATAGAAAGCGTAGGGAAAGGATTGATCCGAGATGGGA CTGCCTTCGTCACCTTCCCCGTTAAGTACCAGTGCGTTGTTTTCAGACCTTTCAAAGGCGAGATTTTGGAAGCTGTTGTCACTCTC GTCAATAAGATGGGTTTCTTCGCTGAAGCTGGACCTGTTCAGATTTTTGTGTCCAAGCATTTGATTCCAGATGATATGGAGTTTCA GGCTGGAGACATGCCTAACTACACGACATCTGATGGATCAGTTAAGATCCAGAAAGAATGTGAAGTAAGGCTAAAGATTATTGGAA CAAGAGTCGATGCCACTGAAATCTTTTGTGTGGGTACCATCAAAGACGATTTTTTGGGAGTCATAAACGACCCTGCAGCCGCTGCA TAAGCAAAGGTTTCAGGCCGACTTCGCTTTTGGTCCAGAAGATGCCATGTGATAAAAGATGTAACATAGACCATCTACAAGTTGAA GTTTATGGATATGTTTATTCTGAATAATGTTTCACTTCATTCGAGTCTAGTGGACTTTGTTCTTTTATATTTTTTTCAAGAGTGTA TCTTATTGTGTTAGAAATAAAAGTAATCGCGAA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002866314 DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]	904	3e-095
NP_200726 DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis thaliana]	889	1e-093
XP_002520498 DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative [Ricinus communis]	874	8e-092
XP_002298912 predicted protein [Populus trichocarpa]	868	4e-091
P46279 RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7	862	2e-090

Swiss-Prot top hits (Blast detail)	Score	e value
P38421 DNA-directed RNA polymerase II subunit RPB7	889	6e-095
P46279 DNA-directed RNA polymerase II subunit RPB7	862	9e-092
Q5E9B8 DNA-directed RNA polymerase II subunit RPB7	508	1e-050
Q7ZW41 DNA-directed RNA polymerase II subunit RPB7	508	1e-050
P62487 DNA-directed RNA polymerase II subunit RPB7	508	1e-050

TrEMBL top hits (Blast detail)	Score	e value
Q541V8 Putative RNA polymerase II	889	1e-093
B9S3C9 DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative	874	5e-092
B9GGV6 Predicted protein	868	3e-091
C6SWZ3 Putative uncharacterized protein	862	1e-090
B7FHG8 Putative uncharacterized protein	859	3e-090

Arabidopsis top hits (Blast detail)	Score	e value
AT5G59180.1 NRPB7; DNA-directed RNA polymerase/ RNA binding	889	6e-096
AT4G14660.1 NRPE7; DNA-directed RNA polymerase	177	2e-013
AT3G22900.1 NRPD7; DNA-directed RNA polymerase	167	3e-012
AT4G14520.1 DNA-directed RNA polymerase II-related	118	1e-006
AT4G14520.2 DNA-directed RNA polymerase II-related	118	1e-006

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	4			80%


10	1			20%

Unigene Members	Member information