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Information for unigene UN14947
| FASTA Sequence |
| Unigene ID: UN14947 | Length: 1627 |
SSR | | GGGAAGGGATCAAACTTTATGCAATCTCAGCCACATCAACATCAAAACGCACTATTCTAAGTGACCTTATAACAGTGTATGCGAAG
GGTGGGAAGACCATTGTTTTTACCCAAACGAAAAGAGATGCAGGCGAGGTCTCTCTATCGTTGTCAAACAGTATAGCTTCCGAGGC
ACTTCATGGAGATATCTCTCAGCATCAAAGAGAGAGAACACTCAATGGTTTCCGCCAGGGGAAGTTCACAGTACTGGTTGCCACTG
ATGTTGCATCTCGTGGACTTGACATCCCGAACGTAGATCTAGTTATCCACTATGAACTTCCTAATGACCCGGAGACTTTTGTGCAC
CGTTCTGGTCGTACCGGGCGTGCAGGGAAAGAAGGCTCTGCCATTCTCATGCACAGCAGCAGCCAGAAGAGAACCGTGAGGTCTCT
GGAGCGTGACGTGGGATGCAGATTTGAGTTTATTAGCCCACCAACCGTTGGAGACTTGTTGGAAGCGTCAGCAGACCATGTGGTGG
CCACTCTAAACGGTGTTCACCCTGAGTCTATTAAGTTTTTCTCAGCAACTGCTCAGAAACTGTTCGAGGAGAAAGGAACAGATGCT
TTAGCTGCAGCTCTGGCTCACCTTAGCGGTTTCTCTCAGCCACCTTCTTCGAGATCTCTCCTCAGTCATGAACAGGGATGGGTGAC
TTTGCAGTTAATACGAGATCCAGCAAACGCTAGAGGCTTCTTGTCTGCAAGGTCTGTGGCTGGTTTCCTTTCGGATGTTTACCGTC
CAGCTGCAGATAGAGTTGGAAAAATCTTCATGATTGCAGATGAGAGGGTGCAAGGAGCTGTGTTTGATCTACCAGAGGACATCGCG
AAAGAGCTGCTAGAGAATGAAGTGCCAGAAGGAAACAGTATATCCTTGATAACAAAGTTACCCGCGCTGCAAGACGATGGACCGTC
TAGTGATAACTATGGACGGTTCTCTAGCAGAGACAGGATGCCTAGAGGAGGAGGAGGTTCTAGAGGGTCAAGATTTTGCGGTAGAG
GAGGAGGATCATCACGAGGACGTGATAGTTGGGGAGGTGATGATGACAGAAGAAGTAGAAGCAGTGGTGGTGGAGGTAGCAGCTGG
TCCCGTGGTGGTGGTGGTGGTTCCAGAGGAAGTTTTGATGATTGGTTGATTGGCGGCGGTAGTGACCGAAGATCAAGCAGCAGAGC
TCCTTTTAGGGAGAGGAGTTTTGGAGGTGCTTGCTTCAACTGTGGAAGTTCAGGACACAGGGCAGCAGATTGTCCTGACAAGAGAG
GGTTTTAAAGTTAACGGCTTTGTTCTTGAGACAGAGAGAGATCCTTGTCCTTTTTTGGTGTTTTTAATGTGAATCCTTTCATGCTT
GCTTCAACCGTTTTTTTCAAGACGGTAGAGACTGCAGTCATGGAGGATGTATACTTCAGACAAGGGTTTTAATTATAAGCATAGTG
CAGCAGAAAAGTAAGTAAAGGAGAAGGTTTTCCTCAATTGGCATTTTCAGAGATTGCTTCAGAAACAAGGAAAGCTGATGGATCCT
TTTTGTTTTTTTAGGTTATTATGGTGATCAGATTCCATGTTTTTGAATTTTGTATGATTTCAAGTGGTTTAGACAGTCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002874312 RNA helicase [Arabidopsis lyrata subsp. lyrata] | 1926 | 2e-213 |
| NP_001031943 DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] | 1925 | 3e-213 |
| NP_001190402 DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] | 1925 | 3e-213 |
| CAA09196 RNA helicase [Arabidopsis thaliana] | 1921 | 9e-213 |
| AAM91087 At5g26740 [Arabidopsis thaliana] | 1920 | 1e-212 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8L7S8 DEAD-box ATP-dependent RNA helicase 3 | 1925 | 1e-214 |
| Q0DM51 DEAD-box ATP-dependent RNA helicase 3 | 1513 | 7e-167 |
| Q9JIK5 Nucleolar RNA helicase 2 | 519 | 1e-051 |
| Q9BQ39 ATP-dependent RNA helicase DDX50 | 517 | 2e-051 |
| Q99MJ9 ATP-dependent RNA helicase DDX50 | 515 | 4e-051 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RFT3 Dead box ATP-dependent RNA helicase, putative | 1573 | 1e-172 |
| Q2HUZ8 Helicase, C-terminal; Zinc finger, CCHC-type; GUCT | 1569 | 4e-172 |
| B7EBF8 cDNA clone:J013043E01, full insert sequence | 1513 | 1e-165 |
| B8AMQ6 Putative uncharacterized protein | 1513 | 1e-165 |
| A9PJW0 Putative uncharacterized protein | 1498 | 7e-164 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G26742.2 emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding | 1931 | 2e-216 |
| AT5G26742.1 emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding | 1908 | 1e-213 |
| AT3G22330.1 PMH2 (putative mitochondrial RNA helicase 2); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding | 513 | 6e-052 |
| AT3G22310.1 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent helicase/ DNA binding / RNA binding | 506 | 4e-051 |
| AT5G62190.1 PRH75; ATP-dependent helicase/ DEAD/H-box RNA helicase binding | 397 | 2e-038 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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