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Information for unigene UN15222
| FASTA Sequence |
| Unigene ID: UN15222 | Length: 1686 |
SSR | | GGAAAGGCATTGACGACGAAAAAAAAGCCTTCTTCGATCTACACTTCTCTTCTCTTCTCTTGTCTCTCTCTCTCTCTCCCATCTAA
CCTCTCGCAGACAAGGTTGGTAATGGCAGAATCATCCAAAGTCATTCATGTTCGTAATGTTGGACATGAGATTTCTGAAAATGATT
TGCTTCAGCTTTTCCAACCGTTTGGTGTCATAACTAAGCTCGTGATGCTCAGGGCAAAGAATCAGGCTCTTCTCCAGATGCAAGAT
GTTTCTTCAATCACTGCTCTTCAGTTCTTCACTACTGTCCAGCCAACCATAAGAGGAAGGAATGTGTATATCCAATTCTCGTCTCA
CCAAGAATTGACAACAGCCGAGCAGAATATTCATGGACGTGAAGATGAGCCGAATCGTATTCTCTTGGTGACAGTCCATCACATGC
TGTATCCAATCACCGTTGACGTCCTGCATCAAGTTTTTTCTCCCTATGGATTTGTGGAGAAGATCGTCACTTTCCAGAAGTCTGCT
GGTTTTCAAGCTCTTATACAGTATCAGGCACAACAGTGTGCTGCCTCTGCTAGAACTTCTCTACAGGGTCGTAACATATATGACGG
GTGTTGTCAGTTGGATATCCAGTTCTCCAACCTTGAGGAGCTGCAAGTAAATTACAACAACGATCGATCTAGGGATTATACAAATC
CAAACCTGCCATCAGAGCAAAAAGGCCGTTTACCTCACCCTGGCTATGGTGATGCAGGAGTGGCCTATCCTCAGGTGAGTAATGCT
AAAAGCTCCATGATACACGGTTTTAGCAACGATTTTGTTCTCTTAAATCTCATGTATTTGCTGTTATTTAGATGGCAAACACATCT
GCGATTGCAGCTGCCTTTGGCGGTGGCTTGCCTCCGGGTATAACTGGCACAAATGATAGGTGTACAATCCTTGTCTCCAATCTTAA
TACAGATAGTGTTGATGAGGATAAGCTGTTCAATCTCTTTTCTCTTTACGGGAACATTGTGAGGATAAAGCTTCTTCGAAACAAAC
CTGACCATGCCCTTGTCCAGATGGGAGATGGTTTCCAAGCTGAACTTGCAGTTCACTTCCTCAAGGGAGCGATGCTGTTTGGTAAG
CGGCTAGAGGTGAACTACTCGAAGCATCCAAATATAACACCAGGCACAGACTCGCATGATTATGTTAACTCGAACCTGAACCGTTT
CAACCGCAATGCTGCAAAGAACTACCGCTATTGCTGCTCCCCTACCAAGATGATTCACTTGTCCACTTTTCCGCAAGACGTGACAG
AGGAAGAAGTGGTGAACCACGTCCAAGAGCGTGGAGCCATACTGAACACAAAAGTGTTTGAGATGAACGGGAAAAAGTAAGCTCTG
GTGCAGTTTGAGAACGAGGAGGAAGCTGCGGAAGCACTGGTTTGCAAGCATGCGACCTCTCTAGGAGGTTCAATTATCAGAATCTC
CTTCTTTCAGCTGCAGACAATTTAAAGTCGACAAAGGCCTCTCTCTCTTTTCTCTCTCTCTCTCACCTCTAATGACATTTGGGTAT
GGTGAGGATGATGAATGTGTGTTTGTTTAACTCAAATATTTCTGCTACTTGTTTGGACTTTTCTACACTCTTTTTTTAAACTTGGT
CCCTTGGTTTAAATTTGTTTGTGCTGATTTAATGGTAATAAACATTTAAGGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002893943 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1082 | 2e-115 |
| NP_175010 polypyrimidine tract-binding protein 3 [Arabidopsis thaliana] | 1071 | 3e-114 |
| NP_001077673 polypyrimidine tract-binding protein 3 [Arabidopsis thaliana] | 1060 | 6e-113 |
| XP_002524303 polypyrimidine tract binding protein, putative [Ricinus communis] | 964 | 8e-102 |
| XP_002306709 predicted protein [Populus trichocarpa] | 944 | 2e-099 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q6ICX4 Polypyrimidine tract-binding protein homolog 3 | 1071 | 1e-115 |
| P26599 Polypyrimidine tract-binding protein 1 | 332 | 7e-030 |
| Q8WN55 Polypyrimidine tract-binding protein 1 | 322 | 1e-028 |
| Q29099 Polypyrimidine tract-binding protein 1 | 320 | 2e-028 |
| Q00438 Polypyrimidine tract-binding protein 1 | 320 | 2e-028 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WQH0 Putative uncharacterized protein At1g43190 | 1071 | 2e-114 |
| A8MR27 Uncharacterized protein At1g43190.3 | 1060 | 4e-113 |
| B9SE84 Polypyrimidine tract binding protein, putative | 964 | 6e-102 |
| B9GT89 Predicted protein | 945 | 9e-100 |
| B9H7U5 Predicted protein | 944 | 1e-099 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G43190.1 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative | 1071 | 1e-116 |
| AT1G43190.2 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative | 1071 | 1e-116 |
| AT1G43190.3 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative | 1061 | 2e-115 |
| AT3G01150.1 PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1); RNA binding / nucleic acid binding / nucleotide binding | 340 | 7e-032 |
| AT5G53180.1 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2); RNA binding / nucleic acid binding / nucleotide binding | 333 | 5e-031 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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