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Information for unigene UN15229

FASTA Sequence
Unigene ID: UN15229Length: 1271 SSR 
GGAGTCCCTTTCAGAGTCAGAATGAAACGGTCCGTGGAAGAACTGAAATAGCACCAGATCATAGGGAGAAATTTCTACAGCGGTTA
CAACAAGTACAACAAGGCCATGGTAACCTCTTAAGCATGGCTTCTCTATCCGGAGGAAACGAGAAGCAGTTTTCTTCACAACAGCA
AAATCCGCTCTTACAGCAGAGCTCTGCCATGTCTCCTCATGGTGGCTCGGGAATTCAGGCGCCAGGATTTAATCTTATGAGTTCTG
GCTCCTTACAGCACTCGTCAAATGCCATGACTCAACAATTTGGTCAGCAGCCTTCTGTTGCAGATGTTGATCATGCCAGAATTGAC
GATCAGCTGCAACAAAACTTACCTGAGGATTCAACTTCCATAGCAGCTTCAAAAACTATTCCTAATGAGGATGAGTCTAAAGGTCT
ATTTGATAATCCGTCGGGAATGCCCAGCTACATGTTGGATCAAGTACAGGTAACTAGGGACGGTCCTGATTTCTCTCCTGGACAAC
CCATACAACCTGGCCAACCTTCAAGTAGCCACGGGGTTATTGGACGTAGAAGTAACTCTGAACTAGGAGCTATTGGTGACCCCTCA
GCTTTAGGGCCACCAATGAACGATCAGATGCACAATCTCCAGATGCTCGAAGCTGCTTTCTATAGACTTCCTCAACCAAAAGATTC
AGAACGTCCTAGACCCTATACTCCGAGGAACCCAGCAATCACACCTCAATCGTTTCCCCAAACACAAGCGCCAATCGTAAGCAACC
CTTTGTTCTGGGAACGTTTAGGAAGCGATGCTTTTGGAACCGAGCCTTTGTTCTTTGCATTTTACTATCAACAGAACTCGTATCAG
CAGTATCTAGCTGCAAAAGAGCTGAAGAAACAGTCATGGAGATACCACACAGTTCAACACATGGTTTCAGAGACATAAGGAGCCAA
AGATTGCAACTGATGAGTATGAACAAGGAGCCTATGTTTACTTTGATTTCCAAACCCCAAAAGACGAGAATCAAGACGGAGGATGG
TGCCAAAGGATCAAAAACGAGTTCACGTTTGAATACAGTTATCTCGAAGATGAACTCGCCGTATAGACAGAGAGAGAGAGATACAT
GTTGTCTAATGTATATGCTCTCGCGCAAGTGTTATTTCCTGAGTTTGTACTCATTTCTTTTCAGTACTTTTTAATTAACCAAAGAA
ACAGATTTTTCTAGTAATCTGTTTTCTTAAACCGTAATAATCATTTGAGGAATGCACCATTACTAGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_568361 CCR4-NOT transcription complex subunit 3 [Arabidopsis thaliana]13275e-144
NP_001154716 CCR4-NOT transcription complex subunit 3 [Arabidopsis thaliana]13275e-144
XP_002873878 transcription regulator NOT2/NOT3/NOT5 family protein [Arabidopsis lyrata subsp. lyrata]13275e-144
AAK43900 Unknown protein [Arabidopsis thaliana]13194e-143
BAJ96501 predicted protein [Hordeum vulgare subsp. vulgare]7541e-077

Swiss-Prot top hits (Blast detail)Scoree value
O75175 CCR4-NOT transcription complex subunit 32303e-018
Q8K0V4 CCR4-NOT transcription complex subunit 32251e-017
O13870 General negative regulator of transcription subunit 31685e-011

TrEMBL top hits (Blast detail)Scoree value
Q94JY7 Putative uncharacterized protein At5g1823013193e-143
Q9FK48 Similarity to transcription regulator7153e-073
Q56WI4 Putative uncharacterized protein At5g182306912e-070
A2Q5Q7 Not CCR4-Not complex component, N-terminal; tRNA-binding arm5721e-056
B9SHH5 Putative uncharacterized protein5693e-056

Arabidopsis top hits (Blast detail)Scoree value
AT5G18230.1 transcription regulator NOT2/NOT3/NOT5 family protein13272e-146
AT5G18230.2 transcription regulator NOT2/NOT3/NOT5 family protein13272e-146

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
84  67%
 
112  33%

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