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Information for unigene UN15245
| FASTA Sequence |
| Unigene ID: UN15245 | Length: 1587 |
SSR | | GAACTACATCTCATTATCTCAACACACGTCCATAACACAAAGCCAAACCTTTGTATGATTACAGATACAAGTTATAAACCACACAA
AGCCATACAACAAAGAAAAATAATGTTCTGCTTTCTTCTCCCACACGAAACAGAAACCAACAAAAAAAAATTAAAATACTTGAAAG
ACTTCAAGAAACCTATCACTTGGCTTTGACCTCTTCTTTGGTTTCTTCAGTTGTGATAGTCTTAGAGCTTGGAGACTTCCCAATGA
TTGCTTTCTTTGCCCTAACAAGAGACTGCTTCACCTTTGACATAATGCTGTTTGAATGTTTTGGCTTAACAGAAACTTCTTCCGTT
GTGATTTCTGGTTCTTGTTTTGGCTCATCGCTCTCTTTAGCAACAGTTTCTGCTTCTACAACCTCTGCTACTTTCTCTGTAATTGA
TTCCTCTTGTTTGTTTACTTCTGTTGATTCTGTATCATTTTCTTTCTTGATGTTCTCATCTTCTGTAGCTAGTTTAGTTACAACAT
CTTTGGCTTCTTCACTCACTTTCTCTTTTTCATCCTTTGATGGTTCTTCCACCACATCCTTCTCTTCAGTTTTGGCCTTCTCGATG
ACATCAGGAGGAGAAGAAACGTCTCCTTCAGCTTCCTTTTCGAGAGATGTGTCTGAATCTTGATTTGACGGTACAACTCTCTCAGG
GCACAAAGCAGAAACAGATTCAGAAGCTTTTTCATCCTTTGATGGTTCATCCACGACATGATTCACTTCAGTAATGGACTTCTCAA
TGACATCAGAAAGAGAAGAAGCGTCTTCTTCAGTTTCCTTTTTGGGAGCAGTGTCTGAATCTTGGTTTATTGGTACAATTTCCTCA
GGGCACAAAGCAGAACCAGATTCAGAAGTGTCTGGTTTTGGCTCAACTTCAAGAACCTCAACATCTACAGTCTCTGCAGATACTTC
TCTAGGATGTTGAAAATCAACTGGTTCTACCTGTTTGCTTCCTGCTTCATCTGTTGATTCAGAAACATCAACCATCTTCTCCTCCT
CCTCCTCCTTACCCTTGTTTTCTTCTTCAACCACACTCTCCACGGCTCGCTTCTCTTCTGCTTTCTCCACACCAACATTTTCAATC
TTAACTTCTTCAACACTCTCTTTCACAAGGGTTGGTTCTTTAAGCTCCACTTGTTCAGCTACCTTCTCCTCACCATTTTCATCTTC
TGCTTGAACATTAACCTCTGCAACACCCTCTTTTACAAGGCTTGGTTCTTTAAATTCCCCTTGCTCAGCTACCTTCTCCTCACCAT
TTTCATCTTTCACAACTGCTGCAGCCTCCTCCACATCTGCAGGTATCTCTTTCTCCGGCTCACCAGCAGGAGTCTGAACACTCTCC
TCCTCCTTCTCAACCGTCGGGTTTGAATCTGAAACCGGTTTATCTTTAACCGCATCCACAGTTTCTGACAAAACAATCTCTTTCTC
CATCAAGTTAGCCTCCTCATTCACTTTGTTCTCCAGTGACTTTTCAGATGTAGTTGCAGTTGCGGTCTGAGAATCAGAAGCCATGA
AAGAAGATTCAGAAAGAGGGGAGAACAAAAGAAGAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_187241 neurofilament protein-related protein [Arabidopsis thaliana] | 673 | 4e-068 |
| AAF23226 unknown protein [Arabidopsis thaliana] | 673 | 4e-068 |
| BAF02147 hypothetical protein [Arabidopsis thaliana] | 673 | 4e-068 |
| BAF02176 hypothetical protein [Arabidopsis thaliana] | 491 | 6e-047 |
| XP_645495 hypothetical protein DDB_G0271670 [Dictyostelium discoideum AX4] | 294 | 4e-024 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q75JC9 Uncharacterized protein DDB_G0271670 | 294 | 2e-025 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WL60 Putative uncharacterized protein At3g05900 (Fragment) | 673 | 3e-068 |
| Q9SFF5 F10A16.20 protein | 673 | 3e-068 |
| Q0WL31 Putative uncharacterized protein | 491 | 4e-047 |
| A9V7R0 Predicted protein | 317 | 6e-027 |
| A2FIF9 Flocculin, putative | 299 | 7e-025 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G05900.1 neurofilament protein-related | 673 | 2e-070 |
| AT2G22795.1 unknown protein | 211 | 6e-017 |
| AT2G45000.1 EMB2766 (EMBRYO DEFECTIVE 2766); structural constituent of nuclear pore | 170 | 3e-012 |
| AT1G72150.1 PATL1 (PATELLIN 1); transporter | 143 | 5e-009 |
| AT5G24880.1 INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT5G10660.1); Has 195834 Blast hits to 92446 proteins in 2480 species: Archae - 1007; Bacteria - 19200; Metazoa - 85171; Fungi - 18359; Plants - 7291; Viruses - 1072; Other Eukaryotes - 63734 (source: NCBI BLink). | 136 | 3e-008 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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