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Information for unigene UN15319
| FASTA Sequence |
| Unigene ID: UN15319 | Length: 2294 |
SSR | | CGAACGAATAGTCCCTGAATAATTGATTGGACGCTATGCCCTATCCGACCGCACACTAGGTTCTACCTGATTGTATGCTTTAAAGC
CTAGTGTAATTTTGAACAGAGCTAAAATCAAAACGAAGTGTTTATTTTACGCATTTGCCTACGTAAACGGAAGTGATATTAACTGA
AATGGATACAATTTCATTTATTATTTCGAGAAATCCAAAACGAAAATAGCCGCCAGGTTGGGTTTTATTTAGTGCTTTTGCGATGT
AGGCATGGCAAGAGATACTGAAGTTGGAATATCCTTCCACTGTTGTGTCACAGTCTTGATCTGAGTGAAAAAGTCTACTCCAGCTT
TGCCATAAAAGTTCAGGTCTCCTGCAAATGAAGCTTTGTTCCCAGTAAAGGAGAAGAACGGTAACGGAACCGGGATTGGAACGTTT
ATACCAATCTGTCCTGCTTCTATTTCCATCTGGAACTTTCTTGCCGCTGCGCCCGATGCAGTGAAAATTGCAGCACCGTTGCCATA
CTTGTTTCTATTCAGTATGTCTATGGCTTCATCAAAGCTGCTTGCCTCCATGCATACAAGAACGGGGCCAAATATTTCTTCCTTGT
AACACTCCATGTCTGGGGTAACACCAGATAAAATGGTAGGACCGATAAAATTCCCTTTCTCGTATCCAGGAACCACAATATTTCTT
CCGTCAAGCAACAGTTTAGCACCATCGTCCACACCAGACTGAATCAAGCGACATATCCTTTCTTTGGCCTGTTTACTAATCACAGG
ACCCAGGTCTGCATCTGGCTCTGTTCCACATGAGACTTTAAGGGCTTTAGCTCGCTCGACAAGTTTATCCTCCCATGATTTTGAAC
TGCCAACAAAGACCACTGTACTCAGAGCCATGCATCTCTGTCCAGCGGCACCAAATCCAGCAGCAAGTAGCGCATTCAAAGTAGCG
TCGACGTTGGCATCAGGCAGGACAACTCCATGATTTTTCGCCCCCATATTTGACTGAATACGTTTTCCTTTGGCTGCTGCTCTTGC
ATATATATGCATTCCAGCAGTGTTTGAGCCAACAGAGGAGACAGCCCTGATATCATCATCATCATCACAGATAGCATTCACAGTAT
CATTGGTACCGTGAACGATATTGAGAACCCCGTCAGGTAATCCAGCTTCCATTGCGAGCTCCGCAAGCATTACAGAAGCACCAGGA
TCCTTTTCTGATGGCTTTAAGACAAAGGTATTGCCACATGTCACCGCAATGGGAAACATCCATAAAGGAATCATAGCAGGAAAGTT
GAAAGGACAAATGCCAGCACATACACCTAATGGCTCCCTAAGACTATACGTATCGACTCCGTTTGACACATTGGGGACATATTCTT
TCTTTGGCCTGTTTACTAATCACAGGACCCAGGTCTGCATCTGGCTCTGTTCCACATGAGACTTTAAGGGCTTTAGCTCGCTCGAC
AAGTTTATCCTCCCATGATTTTGAACTGCCAACAAAGACAACTGTACTCAGAGCCATGCATCTCTGTCCAGCGGCACCAAATCCAG
CAGCAAGTAGCGCATTCAAAGTAGCGTCGACGTTGGCATCAGGCAGGACAACTCCATGATTTTTCGCCCCCATATTTGACTGAATA
CGTTTTCCTTTGGCTGCTGCTCTTGCGTATATATGCATTCCAGCAGTGTTTGAGCCAACAAAGGAGACAGCCTGATATCATCATCA
TCACAGATAGCATTCACAGTATCATTGGTACCGTGAACGATATTAAGAACCCCGTCAGGTAGTCCAGCTTCCATTGCGAACTCCGC
AAGCATTACAGAAGCACCAGGATCCTTCTCCGATGGCTTTAAGACAAAGGTATTGCCACACGTCACCGCAATGGGAAACATCACTT
TAGTGTGCACTTTTCCCTCATGTGGAACCGAAGAAAGTTCCACGTCCAATAGCGTCGGCGTTTGCGTCTCACAAGGCAGCCTCGTT
AAGGTATTGGTCAGCAAGTTGGACTCTCTTGACGTTCTCTTGCTCCATCACAAGCATGTTACCGTACTCCATAAGCTTGGCAAGAG
TCATCTCTGGTTGCTCGAACACTGGAGGAGCTTCCCTTGAGTTCACCAGCCTCTTGCTTATCTTCTCCACTCCAAGTCCCTCGACG
AACTTCCTCACTTCATCATCGTACACTCTAGCCCTCAATGCACCAAAGAAATCGATGGATTGGCCAGGGAACTGGTCAACAAGCGT
GACAATGTCTTCATCCTTGACACCGTCAGTCCTGAAGATACCCTTGGACACACCGATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002885906 ALDH6B2 [Arabidopsis lyrata subsp. lyrata] | 1876 | 2e-207 |
| NP_179032 Methylmalonate-semialdehyde dehydrogenase [acylating] [Arabidopsis thaliana] | 1866 | 3e-206 |
| NP_001077887 Methylmalonate-semialdehyde dehydrogenase [acylating] [Arabidopsis thaliana] | 1866 | 3e-206 |
| XP_002518343 methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis] | 1763 | 3e-194 |
| XP_002300008 predicted protein [Populus trichocarpa] | 1758 | 1e-193 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q0WM29 Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial | 1866 | 1e-207 |
| P52713 Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial | 1292 | 5e-141 |
| Q07536 Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial | 1279 | 2e-139 |
| Q9EQ20 Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial | 1276 | 3e-139 |
| Q02253 Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial | 1275 | 4e-139 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8MQR6 Uncharacterized protein At2g14170.2 | 1866 | 2e-206 |
| B9RX74 Methylmalonate-semialdehyde dehydrogenase, putative | 1763 | 2e-194 |
| B9GH76 Predicted protein (Fragment) | 1758 | 7e-194 |
| A9PF49 Putative uncharacterized protein | 1726 | 4e-190 |
| B9HN83 Predicted protein (Fragment) | 1726 | 4e-190 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G14170.1 ALDH6B2; 3-chloroallyl aldehyde dehydrogenase/ methylmalonate-semialdehyde dehydrogenase (acylating)/ oxidoreductase | 1867 | 9e-209 |
| AT2G14170.2 ALDH6B2; 3-chloroallyl aldehyde dehydrogenase/ methylmalonate-semialdehyde dehydrogenase (acylating)/ oxidoreductase | 1867 | 9e-209 |
| AT2G14170.3 ALDH6B2; 3-chloroallyl aldehyde dehydrogenase/ methylmalonate-semialdehyde dehydrogenase (acylating)/ oxidoreductase | 1702 | 1e-189 |
| AT2G39730.2 RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator | 567 | 5e-058 |
| AT2G39730.3 RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator | 567 | 5e-058 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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