Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN15328

FASTA Sequence
Unigene ID: UN15328Length: 687 SSR 
TTGGAGAAAACACACAAATCTTTACCCACTGATTTGCTTACAAGCTTCTAGTCAGAAAATGAGTTTTAGATAATCATCAAATACAT
AGGCATAACACAAAGAGATCCATCCTAAACAAAGAGCTCTCTAGCGTCTTCTTTTATCAAACACAGACTCTCTCTCTCAAGAGATA
CTTAAAGAAACAAATAAGTAAGGCGAGTGGTTAAGAATCTATTTCCTTGGCGGATTTGTTGATGAGAGACTTGTGGATATGAGGGA
TAACACCACCACCAGCTATAGTTCCTTTGATGAGAGTATCAAGCTCTTCATCTCCACGAATCGCAAGCTGCAAGTGCCTGGGAGAG
ATACGTTTCACCTTGAGATCCTTGCTAGCATTACCAGCCAACTCCAAAACTTCTGCAGTAAGATACTCAAGTATCGCTGCGGTGTA
GACAGCTGCAGTTGCTCCGACCCTTCCGTGAGCAGTGGACCTTGTCTTCAACAGCCTATGCACCCTTCCTACAGGGAACTGAAGAC
CAGCTCGAGCAGAACGGGTGATGGGTTGTTTCTTCTTGTCCTTATCCTTCTCGCTACCGCTGGGTTTCCCCATTATCAATCCTTTA
GCTCCTTTCCCCGACATTTTTCCCGCCAAAAGTCTCACAATTTGCTGCGCTGATAGAGAGAAGAGAGAGAGAGAGATCGCAGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_175683 histone H2A protein 9 [Arabidopsis thaliana]6443e-065
XP_002885097 hypothetical protein ARALYDRAFT_341690 [Arabidopsis lyrata subsp. lyrata]6148e-062
XP_002529367 histone h2a, putative [Ricinus communis]5977e-060
ACU14550 unknown [Glycine max]5905e-059
ACU14444 unknown [Glycine max]5905e-059

Swiss-Prot top hits (Blast detail)Scoree value
Q9C944 Probable histone H2A variant 36441e-066
O23628 Histone H2A variant 15732e-058
Q8H7Y8 Probable histone H2A variant 15696e-058
Q8S857 Probable histone H2A variant 25572e-056
Q84MP7 Probable histone H2A variant 35411e-054

TrEMBL top hits (Blast detail)Scoree value
B9STP8 Histone H2A5975e-060
C6SYX1 Histone H2A5903e-059
C6SZ77 Histone H2A5903e-059
A5AKG7 Histone H2A5894e-059
A9NMZ1 Histone H2A5832e-058

Arabidopsis top hits (Blast detail)Scoree value
AT1G52740.1 HTA9 (HISTONE H2A PROTEIN 9); DNA binding6493e-068
AT3G54560.1 HTA11; DNA binding5732e-059
AT2G38810.1 HTA8 (HISTONE H2A 8); DNA binding5339e-055
AT2G38810.3 HTA8 (HISTONE H2A 8); DNA binding5339e-055
AT2G38810.2 HTA8 (HISTONE H2A 8); DNA binding5339e-055

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  67%
 
91  33%

Unigene MembersMember information