Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN15403

FASTA Sequence
Unigene ID: UN15403Length: 1170 SSR 
GCAGAAAGAAAACCATAATAATAACAATAAAACTGTACATAATGCCCCGAGAGCTTTGACAACATTTAAAAGTAGAGAAGTAACAT
TTAACAGATTCAGAGAACATAAACATACGAGCAAAATGATAAAACATGTGAAGAAGAAGAAGCATAAGTAGGTGGAAAGTTCTTAC
AACAAAGTTCAGGGTTTTGTCTTAACAGTCTTACCTGAGAATCATTGCTGGGAGAAGGATCAGACTGGTGTTGGGTTGGATACTGG
CGGCTGCTCTGGCGACAAAGCAAAGTGAAGTCCCCTGCGTTGAGGCACACCACCGTGTATCATGAAGGCAACTTCCGCGGCAGCTA
GAGCAGCAGCTTCCTGTCTTTGCCTCCGGCGCTGGAGAATTCCAATGGCCCATGCCATGATGTAACATGGCAGGAGAAAACCAGCA
GCACGAAGAAGAAAAAGAGAGAAGAAGGCAGTGGGATCGTCCTCGTCATCTGGGTTAGTCGTGAGGTTTAGTGCATCTCGTAACAG
TAAAAGTGCCATCAGGATGAGAGCAGCAGAGCGACAGAAGGCAGCACCGCTCGAGTTAGACTCAGAGTACTCATCATAGTCAGCTT
CCAGGAAATGGCGTTCTGCTGCAGCCATTGCTAGAATGCGCGGGTCGCTCAAGTCCAAGTGAACTCCAGTCTCCCAATCCTCACCA
ATATGAATGATAGTTTCATCAGGAGGAGGAGGTGGAGGTGCTGTATATCCAGATTGATAAGGCTGGTGGCATATTTCGCAGATAAT
GTCGCCTTTCTCATTACACCAACGCTGAACACACTTGCGGTGCGCATACTTCAAACTGCCATTGCAAGCACAAGGAGCCTCCAAGT
TGTTAGTGATATCTTCCTCCTGGCAAATACGGCACTCAACAGACTGGAGAAGCGGTTCCTCTTCCGCAGGGACAACAGCATAGTAC
TTCCTGGCATCTTCAGCTTCATCGACAGACGCAGACGAAGAAGAAGAAGAAGCCACATCTCTGCCTTGAGGACAAGAACTTTCTCC
AGAGTCCTTTTCTGACTCCAAGCTCTCACCCGTTATGAGACGATCCGTACATGAACTCAGATGATCCGACATCTTTCACCCAATGC
AGAACCGCTATTGATAGAAGGGGTCACAATAATAGAGAGGAATCAACATTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ADA67984 RING-type E3 ubiquitin ligase [Brassica napus]13713e-149
XP_002875846 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]12827e-139
NP_190339 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]12782e-138
NP_850668 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]11142e-119
XP_002864796 hypothetical protein ARALYDRAFT_496422 [Arabidopsis lyrata subsp. lyrata]10443e-111

Swiss-Prot top hits (Blast detail)Scoree value
Q86YJ5 E3 ubiquitin-protein ligase MARCH91372e-007
Q3TZ87 E3 ubiquitin-protein ligase MARCH91372e-007
Q32L65 E3 ubiquitin-protein ligase MARCH21327e-007
Q9P2E8 E3 ubiquitin-protein ligase MARCH41301e-006
Q80TE3 E3 ubiquitin-protein ligase MARCH41301e-006

TrEMBL top hits (Blast detail)Scoree value
D2KC47 RING-type E3 ubiquitin ligase13712e-149
Q9SN83 Putative uncharacterized protein At3g4755012781e-138
A9CEI2 Uncharacterized protein At3g47550.211141e-119
Q9FJJ6 AT5g62460/K19B1_710352e-110
Q3E6V0 At3g475509601e-101

Arabidopsis top hits (Blast detail)Scoree value
AT3G47550.3 zinc finger (C3HC4-type RING finger) family protein12796e-141
AT3G47550.6 zinc finger (C3HC4-type RING finger) family protein12796e-141
AT3G47550.2 zinc finger (C3HC4-type RING finger) family protein11148e-122
AT5G62460.1 zinc finger (C3HC4-type RING finger) family protein10351e-112
AT3G47550.1 zinc finger (C3HC4-type RING finger) family protein9606e-104

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
123  75%
 
91  25%

Unigene MembersMember information