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Information for unigene UN15460

FASTA Sequence
Unigene ID: UN15460Length: 1478  SNP
GGACTTGTTTAACATCCCTTTGACCATAATCAAAACTACTTCAGATCTGAAAGGGCTTTCTCTCGCCAGTCTCTGTCGCGTATTCT
CCGGCGTCGTTTCATGATCTGACTTTGGTCTCTTCTTCTCCCCTCTCTTTTTTTTGTTCTTTCTTTTACTTGGTCTACTTCTGAAC
ATGCCACGCCCTTTCTTCCACAAGCTGATTTTCTCATCCACTATCCAAGAAAAACGTCTGAGAGTTCCAGATAAGTTTGCGAGTAA
ATTCAAGGACGAGCTATCGGTTGCAGTTGCACTCACAGTACCAGACGGTCATGTTTGGCGTGTAGGACTCAGGAAAGCTGACAACA
ACAAAATCTGGTTTCAAGATGGTTGGCAAGAGTTCGTCGACCGTTACTCCATCCGCATTGGCTATCTTTTGGTCTTTAGATACGAA
GGCAACTCTGCCTTCAGCGTCTACATTTACAACTTATCACACTCCGAGATCAACTACCATTCCTCCGGTCTCATGGACACTCCACA
CAACCACCTCAAACGCGCCCGTTTGTTTGAAGACCTTGAAGACGAAGACGCCGCCGCCGAGGTTGTTGTTTACTCTTCTTCTTCTT
CGGTGTATCCACCGTCATCACATCATCCTGGAGTTACTGTAGCCGTTAATAAAGGGTATGCTAGTAGTAGTCCAGCTATCCAGAGC
TTCTTCGCTGGACCTGTTAAAGCTGAAGAGACAACACCAACCCCAAAAGTTGCTAAAAAGAGAGGGAGGAAGAAGAAGAACGCTGT
TCCTGAGGAGATAAACTCATCTGCTCCACGAGATGATGATCCAGAGAGCCGTTCAAAGTTCTACGAGAGTGCTTCTGCGAGAAAGA
GAACGGTGACTGCAGAAGAAAGAGAGAGGGCCATCAATGCAGCCAAAACGTTCGAGCCAACAAACCCTTTCTTCAGAGTTGTTCTC
CGACCATCTTATCTATACAGAGGCTGCATCATGTATCTGCCTTCTGGTTTTGCTGAGAAGTACTTAAGTGGGATCTCGGGGTTCAT
CAAGGTCCAGCTCGGGGAGAAACAGTGGCCAGTGAGATGCCTCTACAAAGCAGGGAGGGCCAAGTTCAGCCAAGGATGGTACGAGT
TCACCCTGGAGAACAACCTGGGAGAAGGTGACGTGTGCGTGTTCGAGCTGCTCAGAACCAGAGATTTCGTCCTGAAAGTAACAGCC
TATCGAGTCAACGGAATCTAGTACTAGTCGTTTCCTTATCGATTGATCTGCAGTGGAGGAGGAGGGATATCAAACCGCAAATTTCG
TGTAGGGTTTTTTTAAATATCTTTAATTTAAAAAATAACTAAACTCTCTTTCTCTCTCTTTCTATCTATCTCTGTGTCATTGAGTC
AGTTGTGTCGTTTTCTTCTCGATGTGGATAAGTTGTTTTATCATAATATGTAACCTCCGTGTGCAACTCAAAATTGTTTGATTAGA
AGTTAGGTTTAAGAGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_188529 B3 domain-containing transcription factor VRN1 [Arabidopsis thaliana]15812e-173
BAJ34355 unnamed protein product [Thellungiella halophila]15785e-173
XP_002885287 hypothetical protein ARALYDRAFT_479415 [Arabidopsis lyrata subsp. lyrata]15444e-169
BAB01695 unnamed protein product [Arabidopsis thaliana]9575e-101
AAR92199 reduced vernalization response 1 [Brassica rapa]8723e-091

Swiss-Prot top hits (Blast detail)Scoree value
Q8L3W1 B3 domain-containing transcription factor VRN115819e-175
Q9XIB5 B3 domain-containing protein REM198344e-088
Q8S2E6 B3 domain-containing protein Os01g07235002628e-022
Q10GM4 B3 domain-containing protein Os03g06221001571e-009
Q10GM3 B3 domain-containing protein Os03g06222001561e-009

TrEMBL top hits (Blast detail)Scoree value
Q6R2U8 Reduced vernalization response 18722e-091
Q6V0J6 Reduced vernalization response 18651e-090
B9N4T6 Predicted protein (Fragment)6303e-063
B9RZH6 DNA binding protein, putative6251e-062
B9NJ20 Predicted protein (Fragment)5944e-059

Arabidopsis top hits (Blast detail)Scoree value
AT3G18990.1 VRN1 (REDUCED VERNALIZATION RESPONSE 1); transcription repressor15817e-176
AT1G49480.1 RTV1 (related to vernalization1 1); DNA binding / transcription factor8343e-089
AT4G33280.1 DNA binding / transcription factor1345e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
83  30%
 
93  30%
 
212  20%
 
201  10%
 
71  10%

Unigene MembersMember information