RadishBase

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Information for unigene UN15501

FASTA Sequence

Unigene ID: UN15501	Length: 856	SSR
TCCCAATATAGTTTTCTCTACCAAGACTTGAATCATTTTATAATGTTAACATCAATGCAACCACACAGAGAAAGAAACCAAAAACA AAAGAGAATCAGACAAAAGCAAACAGCTCTCCCCACAGTGGAAGCAGCTTCCTTTTCACTCAAAAGCGTCATCATCATCATCAGGA AGAGGCTGAGCCGCAGCTGCAATGAGATCAGCCTCGTTCTTCTGCTGCTCAGCAAAGTCAATGTGAACTCTGGGGGAGCGAGAGCC GGGGACTCGACGAAGTGAAGGTTCTGGTCGCCCGCGAGCTTCCTAGCTAAGTACAAGAAAGGCTTCTCGAAGTTGTAGTTGCTCTT GGCGGATATCTCGTAGTACTGAAGATTCTTCTTCCTGTGGAACGTCACCTGCTTCGCCTTCACCTGCCTGTTTTTCACGTCCACCT TGTTCCCGCACAGGACGATGGGGATGTTCTCACAGACACGGCAGAGGTCGCGGTGCCACGTGGGGACGTTCTTGTACGTGAGACGC GCCGTCACGTCGAACATGATCACTGCGCATTGACCGTGGATGTAGTAACCGTCTCTAAGGCCACCGAACTTCTCTTGACCGGCGGT GTCCCAGCAGTAGAAACGGATCTTGCCACAGTTTGTGAAGAAATCTAGAGGGTGAACCTCCACACCTATTGTAGGTTCATACTTCT TCTCAAACTCTCCGGTAAGATGTCTCTTGACAAAAGTTGTTTTTCCTGTGTCTCCGTCACCCACGATAACGAGCTTGAAGCTAGGG TAATCGACGGTTTGCTGGTTAGGTAGAGCCATGTTGTCGGGATCGAGAGAATTGGGCGATGTATTTGTGTGTGCGTGGAGAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_197502 GTP-binding nuclear protein Ran-2 [Arabidopsis thaliana]	1028	1e-109
ABD17865 putative RAN2 small Ras GTP-binding nuclear protein [Allium sativum]	1028	1e-109
CBI21000 unnamed protein product [Vitis vinifera]	1028	1e-109
ABK94282 unknown [Populus trichocarpa]	1027	2e-109
XP_002308648 predicted protein [Populus trichocarpa]	1027	2e-109

Swiss-Prot top hits (Blast detail)	Score	e value
P41917 GTP-binding nuclear protein Ran-2	1028	5e-111
P41916 GTP-binding nuclear protein Ran-1	1026	9e-111
Q8H156 GTP-binding nuclear protein Ran-3	1023	2e-110
P41919 GTP-binding nuclear protein Ran-B1	1022	3e-110
P38548 GTP-binding nuclear protein Ran/TC4	1022	3e-110

TrEMBL top hits (Blast detail)	Score	e value
A9X4K0 Putative RAN2 small Ras GTP-binding nuclear protein	1028	8e-110
A9PD29 Putative uncharacterized protein	1027	1e-109
B9HA17 Predicted protein	1027	1e-109
B7FGV3 Putative uncharacterized protein	1025	2e-109
Q9FSZ5 GTP-binding protein	1025	2e-109

Arabidopsis top hits (Blast detail)	Score	e value
AT5G20020.1 RAN2; GTP binding / GTPase/ protein binding	1028	5e-112
AT5G20010.1 RAN-1; GTP binding / GTPase/ protein binding	1026	8e-112
AT5G55190.1 RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding	1023	2e-111
AT5G55080.1 AtRAN4 (Ras-related nuclear protein 4); GTP binding / GTPase/ protein binding	771	3e-082
AT5G59150.1 ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D); GTP binding	228	3e-019

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			67%


12	1			33%

Unigene Members	Member information