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Information for unigene UN15504
| FASTA Sequence |
| Unigene ID: UN15504 | Length: 838 |
| SNP | AGGAAAGAATGTGAAGTTTGATAAATATAATAAAGCTCAGTGTTGTAATAAGCTCACAATAGTCACAAACTTTAGATATTGTCTGA
AACAAGGCACGAAAAAAAAAACACAATTCTCTAACAAAAATCCGATTATGAAAGAGATGAAGAAGCAACAACACAATAGAATCAAG
TTCAATGACACAGACAATGTTCTTAAACCTTGAATCCACGGCTCTTCCTCTTTCCTCTGGCCTTCTCGAACTTCCTTCCCTTGGAC
CGAACATATGGCTTCGAGTGACTGTGTGGCACACCAGGTGCGGGACCAAAATGCTTCACAGCCTCACGTGAGTTCTTAGGTCCTCT
AAGAAGAACCGTGTTCTGTCCCAGAGGAGCTCTGAGAGCAAGCTGGTCAAATGTTAAGCATTCACCACCAGCTTTCTCAATGCGAG
CTCTGGCTCTCTCCGTGAACCTCAAGGCAGTGACTTTGATAGCTGGAATCTCGTGTACTCTCAAATCATCAGTGATGGTTCCAACC
AAGACAGCAATCTTATCTTCCTTGCCAGCCATGAACTCGACGAGTCTAGATAGAGAAAGAGGAGCTTTGTTGACTTTGCTCATGAA
AAGCCTCTTCAAGATCACTGCATTGAACTTGCTCTGGGTTCTCCTCACCAGAAACCGGTAAAGCTTGACAGTGAGCTTGAGGTAGA
CATCGTCAGACTTAGGAGCTGTCCTTTTGGTCTTCTTGCTCTTACCTCCAGCGATCAAATCGATACCCATTGTAGCCTCCGGGGAT
GTGGTGCCGCCGCCGCCGCTGCAAGAGATCCATTGAATATCGGTTTTATTACAGTTTATAGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002882427 hypothetical protein ARALYDRAFT_477850 [Arabidopsis lyrata subsp. lyrata] | 925 | 1e-097 |
| NP_187210 60S ribosomal protein L18-2 [Arabidopsis thaliana] | 921 | 3e-097 |
| AAA69928 cytoplasmic ribosomal protein L18 [Arabidopsis thaliana] | 918 | 6e-097 |
| XP_002874343 60S ribosomal protein L18 [Arabidopsis lyrata subsp. lyrata] | 903 | 3e-095 |
| NP_198137 60S ribosomal protein L18-3 [Arabidopsis thaliana] | 895 | 3e-094 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P42791 60S ribosomal protein L18-2 | 921 | 1e-098 |
| Q940B0 60S ribosomal protein L18-3 | 895 | 1e-095 |
| O22254 Putative 60S ribosomal protein L18-1 | 771 | 3e-081 |
| O65729 60S ribosomal protein L18 (Fragment) | 771 | 3e-081 |
| Q4PM04 60S ribosomal protein L18 | 622 | 6e-064 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9GSC1 Predicted protein | 863 | 1e-090 |
| B9RFD6 60S ribosomal protein L18, putative | 861 | 2e-090 |
| A9PAJ5 Predicted protein | 859 | 3e-090 |
| B9SAT7 60S ribosomal protein L18, putative | 857 | 5e-090 |
| A5BIA1 Putative uncharacterized protein | 855 | 9e-090 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT3G05590.1 RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome | 922 | 9e-100 |
| AT5G27850.1 60S ribosomal protein L18 (RPL18C) | 896 | 9e-097 |
| AT2G47570.1 60S ribosomal protein L18 (RPL18A) | 542 | 1e-055 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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