RadishBase

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Information for unigene UN15572

FASTA Sequence

Unigene ID: UN15572	Length: 879		SNP
CTCTCTCCCCCTTTATAAAACACTATCATTCTCAACTGTTTACAGTCACACCATCAAACAACAATCAACATGGCTCCATTTCTCTC CATCTCCCTCGCCCTTGTCGCCATTTTCTTCATTACAGTCTCCGCAGATCCCGACATGCTCCAAGACCTCTGTGTCGCTGATCTCT CCTCCGGAATCAAAGTCAATGGCTTCCCTTGCAAAGACGCAGCCAACGTCACACCACTCGATTTCTTCTCCCAAGGAATAGCCAAT CCAGGCCTCACCAACAACACATTCGGCTCCTTAGTCACAGGCGCAAACGTGATGACCATCCCAGGTCTCAACACGCTCGGCGTCTC CCTCGCACGAATCGACTACGCGCCAGGCGGCTTAAACCCGCCTCACACTCACCCTCGCGCCACCGAAGTCGTCTACGTCCTCGAAG GAGCCCTCGACGTCGGGTTCCTCACCACGGCCAACAAGCTCATCTCTCAGTCTCTCAAGAAAGGCGACGTCTTCGCTTTCCCCAAG GGGCTTGTCCATTTCCAGAAGAACAACGGTCGTGTCCCTGCTTCTGTCATCGCTGCTTTCAATAGCCAGCTTCCTGGGACTCAGTC TCTTGGTGCTACTCTGTTCGGTTCTACGCCTCCTGTTCCTAATGAGATCTTGGCTCAAGCGTTTCAGACATCTCCGGGAACTGTTA AACACATCAAAACCAAGTTCCAACCCAAGGTGTAATAATGATCTTTTGGTTCTGTTTTTTCTAACGGAATGATATTTTCCTCCTTT ATTTGTCTTGTGTAATAAAACCCATAACTGATGTTTTGAGTGTGCATTTGAGCTTTCATTGTCTCATGTATCATCTTCTATATAAT ACAAGTTGTTTTTTTTAGG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_172427 germin-like protein subfamily 2 member 1 [Arabidopsis thaliana]	977	1e-103
XP_002889758 predicted protein [Arabidopsis lyrata subsp. lyrata]	972	4e-103
P94014 RecName: Full=Germin-like protein subfamily 2 member 1; Flags: Precursor	828	2e-086
AAB51577 germin-like protein [Arabidopsis thaliana]	819	2e-085
XP_002278736 PREDICTED: germin-like protein 2 [Vitis vinifera]	812	1e-084

Swiss-Prot top hits (Blast detail)	Score	e value
P94014 Germin-like protein subfamily 2 member 1	828	9e-088
Q94EG3 Nectarin-1	732	1e-076
Q9M263 Germin-like protein subfamily 2 member 4	717	6e-075
Q9S8P4 Rhicadhesin receptor	717	6e-075
Q9SPV5 Nectarin-1	711	3e-074

TrEMBL top hits (Blast detail)	Score	e value
Q0MYQ7 Germin-like protein 2	812	9e-085
A9PF73 Putative uncharacterized protein	775	2e-080
B9I6B2 Predicted protein	772	4e-080
C7S8D5 Germin-like protein 1	769	9e-080
B9N402 Predicted protein (Fragment)	767	2e-079

Arabidopsis top hits (Blast detail)	Score	e value
AT1G09560.1 GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / nutrient reservoir	977	4e-106
AT3G62020.1 GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / nutrient reservoir	717	6e-076
AT1G02335.1 GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.); manganese ion binding / nutrient reservoir	705	1e-074
AT3G05930.1 GLP8 (GERMIN-LIKE PROTEIN 8); manganese ion binding / nutrient reservoir	673	7e-071
AT5G26700.1 germin-like protein, putative	654	1e-068

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


20	1			14%


6	2			29%


10	2			29%


12	2			29%

Unigene Members	Member information