Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN15621

FASTA Sequence
Unigene ID: UN15621Length: 1393 SSR 
GGAATTACTTTCTACAATAAACACTTTTATCTCTTTTCTCTCTTCCCAGTGTTCCTTTACAATGTGGGGCGTCACCGTCGTGTCTC
TCGTCCTTCTTCTCATTGCCACAGCTAATTCCGCCGTTGTCCCCTTCCGTGATGGGATATTACCGAACGGCGACTTCGAGCTCGGA
CCAAAGCCATCCGACTTGAAAGGAACCGAAATAATAAACAAGATGGCCATCCCGAACTGGGAAGTCACGGGGTTCGTCGAGTACAT
AAGCTCAGGACACAAACAAGGAGACATGCTTCTCGTCGTCCCGGCCGGAAAATTCGCGGTGAGGCTCGGAAACGAAGCGTCGATCA
AACAAAGAATCAAAGTGGTGAAAGGAATGTATTACTCGCTCACTTTCAGCGCCGCGAGGACGTGCGCTCAAGACGAAAGGCTCAAC
ATCTCGGTGGCGCCTGACTCTGGCGTCATCCCCGTGCAGACCGTGTACAGCAGCAGTGGGTGGGATCTATACGCTTGGGCGTTTCA
GGCGGAGAGTGAGGTCGCTGAGATAGTGATTCATAATCCAGGTGAAGAAGAGGATCCAGCTTGTGGTCCACTCATTGATGGTGTTG
CCATGAGAGCTCTTTACCCTCCACGACCAACAAACAAGAACATTTTGAAAAACGGAGGATTTGAAGAAGGTCCACTAGTACTACCA
GGCTCAACCACAGGAGTTTTAATCCCACCGTTCATAGAAGACGACCACACTCCTTTACCCGGATGGATGGTGGAGTCACTCAAAGC
CGTCAAGTACGTGGACACAGAACACTTCTCAGTCCCGCAAGGTCGCCGAGCCATCGAGCTGGTAGCGGGCAAAGAGAGCGCCATCG
CTCAAGTGGCTAGGACCATCATCGGGAAGACTTACGTCCTTTCGTTCGCGGTCGGAGACGCCAACAACGCCTGCAAAGGATCGATG
GTGGTCGAGGCTTTCGCGGGGAGAGATACGCTCAAGGTTCCTTACGAGTCGCGTGGCACTGGAGGGTTTAAACGGGCTTCGATACG
GTTCGTGGCGGTTTCGACGAGAACTAGAGTTATGTTTTACAGCACTTTCTATTCCATGAGGAGCGATGATTTCTCGTCCTTGTGTG
GGCCTGTGATCGACGACGTTAAGCTTATAAGCGTTCGTCAGCGGTAGATGAATGGATTATTATTATTATTACAAGAAATGAAGTGT
GTGTGGGGTTTTATTTTCAAAAACTAAAAAAAATACTGTCTTTTGGTGTGTTTTGATTTTTATTCAAAAGATATGTATAAGGTGAC
GGTTTATTTAGGGTTATAATGTATTTTCTTGTATGAGAAGGCAAATGAAGGTTGCCATTTATAGAAACTTGCAAGAATAAAAATTC
AGTAACATCAAGATGAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197928 uncharacterized protein [Arabidopsis thaliana]17603e-194
AAM61720 unknown [Arabidopsis thaliana]17551e-193
AAL06839 AT5g25460/F18G18_200 [Arabidopsis thaliana]17542e-193
XP_002872166 hypothetical protein ARALYDRAFT_910605 [Arabidopsis lyrata subsp. lyrata]17523e-193
NP_196703 uncharacterized protein [Arabidopsis thaliana]16691e-183

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q94F20 At5g2546017602e-194
Q8LEX7 Putative uncharacterized protein17559e-194
Q940Q9 AT5g25460/F18G18_20017541e-193
Q9LYE7 Putative uncharacterized protein At5g1142016698e-184
Q8H168 Putative uncharacterized protein At5g1142016662e-183

Arabidopsis top hits (Blast detail)Scoree value
AT5G25460.1 unknown protein17601e-196
AT5G11420.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25460.1); Has 185 Blast hits to 157 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).16694e-186
AT4G32460.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11420.1); Has 182 Blast hits to 158 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).15162e-168
AT4G32460.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11420.1); Has 182 Blast hits to 158 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).15162e-168
AT1G80240.1 unknown protein12143e-133

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  9%
 
103  27%
 
214  36%
 
192  18%
 
181  9%

Unigene MembersMember information