 |
Information for unigene UN15729
| FASTA Sequence |
| Unigene ID: UN15729 | Length: 794 |
SSR | | GGAGAGAGAGAGAGAGAGAGGCGATGGAGGAAGAGGAGCACGAGGTATACGGCGGAGAGATTCCGGACGTCGGAGAGATGGATGGA
GACATGGACATGACTGCTGCTGATGATGATGCCGCTAAGGAGTTGGATGAGATGAAGAAGCGATTGAAAGAGATAGAGGACGAAGC
TGCTGCTCTTCGTGAGATGCAGGCCAAGGTTGAGAAGGATATGGGACCCCAAGATGCTGGTACTGTAGCAGCAGATCAAGCAGGCG
AAGAGGAGGTGGATGCTCGATCTGTTTTTGTTGGCAATGTTGATTACGCTTGTACACCTGAAGAAGTGCAGCAACACTTCCAATCA
TGTGGCACAGTCCACAGAGTGACAATTCTGACAGACAAGTTCGGGCAGCCAAAGGGGTTCGCTTATGTCGAGTTTGTTGAAGCTGA
AGCTATACAAGAGGCGCTACAACTTAATGAATCAGAGTTACATGGTCGTCAGATAAAGGTGATGCCAAAGAGAACAAACGTTCCTG
GATTGAAACAGTTCCGCGGAAGAAGATTCAACCCGTACATGGGCTTCCGCAGGCCTTTCATGTCTCTCTATATGTATTCACCATAT
GGATATGGGAAAGTTCCTAGGTTCAGAAGGCCAATGCGTTACATGCCATACCAATAAAACCATCATGGTTGCTTTTATTATATCCA
TCCATTGTCTGAGCTTTCAATGACTTCTCGCTCTCTTTGTTTAAGAACTTTGCGATAAAACATTTCGAATCTTGAATTGTTTTTAC
AAGTTTCATATCGTCCCTTT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABL97957 poly(A)-binding protein II-like [Brassica rapa] | 1003 | 8e-107 |
| NP_201329 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1000 | 2e-106 |
| XP_002866661 polyadenylate-binding protein family protein [Arabidopsis lyrata subsp. lyrata] | 995 | 7e-106 |
| XP_002531675 poly-A binding protein, putative [Ricinus communis] | 903 | 3e-095 |
| XP_002306300 predicted protein [Populus trichocarpa] | 896 | 2e-094 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9DDY9 Polyadenylate-binding protein 2-A | 383 | 3e-036 |
| Q7ZXB8 Polyadenylate-binding protein 2-B | 382 | 4e-036 |
| Q6NVP7 Polyadenylate-binding protein 2 | 376 | 2e-035 |
| O14327 Polyadenylate-binding protein 2 | 371 | 7e-035 |
| Q28165 Polyadenylate-binding protein 2 | 369 | 1e-034 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A1YMZ8 Poly(A)-binding protein II-like | 1003 | 6e-107 |
| Q9FJN9 Poly(A)-binding protein II-like | 1000 | 1e-106 |
| B9T0A6 Poly-A binding protein, putative | 903 | 2e-095 |
| B9H4R7 Predicted protein | 896 | 1e-094 |
| B7FID7 Putative uncharacterized protein | 889 | 9e-094 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G65260.1 polyadenylate-binding protein family protein / PABP family protein | 1001 | 6e-109 |
| AT5G10350.1 polyadenylate-binding protein family protein / PABP family protein | 871 | 7e-094 |
| AT5G10350.2 polyadenylate-binding protein family protein / PABP family protein | 789 | 2e-084 |
| AT5G51120.1 PABN1 (POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding / protein binding | 682 | 6e-072 |
| AT3G55460.1 SCL30; RNA binding / nucleic acid binding / nucleotide binding | 127 | 1e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
