RadishBase

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Information for unigene UN15807

FASTA Sequence

Unigene ID: UN15807	Length: 910	SSR
CCGTCGGTGACGTGTACTCTCAATCTCTTCTTCCTCTCTTTCAGACTTTCACATCTCTTCTTTCTGTCTGTCGGATAAACATCACA ACCCAGAAGATAAAGCATCCACCTTTCGGGCAAATTTCATCATCATCATCAGCAGCCATGTCTTACGATTACCTCTTCAAGTACAT CATCATCGGCGACACAGGTGTCGGAAAATCGTGCCTGCTTCTTCAATTTACAGACAAGAGGTTCCAACCAGTCCACGATCTCACCA TTGGTGTCGAGTTCGGTGCTCGTATGGTCACCGTCGATGGACGCCCCTTAAAGCTCCAAATTTGGGACACCGCTGGACAAGAGTCT TTTAGATCCATCACTAGATCGTACTACAGAGGAGCAGCTGGTGCTTTACTTGTTTACGACATCACCAGGAGAGAGACGTTTAACCA TCTGGCGAGCTGGTTAGAGGATGCTAGGCAACACGCTAATCCCAACATGAGTATTATGCTGATTGGGAACAAATGCGATCTCGGTC ACAAGAGAGCTGTTAGCAAAGAGGAAGGAGAACAGTTTGCTAAAGAGCATGGACTCTTGTTCTTAGAAGCTTCTGCTAGAACTGCT CAAAACGTTGAGGAGGCCTTCATAAAGACAGCAGCAAAGATCCTCCAGAACATCCAGGACGGCGTCTTTGATGTATCCAATGAGTC ATCTGGGATTAAGGTCGGCTACGGTCGTCCTCAAGGTGCAGCCGGAGGAAGAGATGGTGCCATCTCTCAAGGAGGTGGCTGTTGTG GTTAAAAGTCATCTCAAGATTTGTCAAAAGTCACACACATATCTGATGTAATCTACTGATTCAGTAACTACTCTTGTTTTTTTTTT CATTAATCTCTGCAAATGGATACAAACAGAATGTATAGTTTCCCTTTCTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002867050 GTP-binding 2 [Arabidopsis lyrata subsp. lyrata]	1080	1e-115
NP_195311 GTP-binding protein GB2 [Arabidopsis thaliana]	1072	1e-114
XP_002312839 predicted protein [Populus trichocarpa]	1029	1e-109
XP_002526048 protein with unknown function [Ricinus communis]	1029	1e-109
BAA88497 small GTP-binding protein [Carica papaya]	1013	7e-108

Swiss-Prot top hits (Blast detail)	Score	e value
P49104 Ras-related protein Rab-2-B	939	1e-100
P49103 Ras-related protein Rab-2-A	917	4e-098
P36863 GTP-binding protein yptV4	898	7e-096
Q39570 GTP-binding protein YPTC4	897	9e-096
Q01971 Ras-related protein Rab-2A	843	2e-089

TrEMBL top hits (Blast detail)	Score	e value
Q38922 ATGB2	1072	7e-115
A9P8X5 Predicted protein	1029	7e-110
B9SJ79 Putative uncharacterized protein	1029	7e-110
Q9SLP2 Small GTP-binding protein	1013	5e-108
C6TDU7 Putative uncharacterized protein	993	1e-105

Arabidopsis top hits (Blast detail)	Score	e value
AT4G35860.1 ATGB2 (GTP-BINDING 2); GTP binding	1073	3e-117
AT4G17170.1 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C); GTP binding / GTPase	981	1e-106
AT4G35860.2 ATGB2 (GTP-BINDING 2); GTP binding	830	5e-089
AT4G17160.1 ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A); GTP binding	781	2e-083
AT1G06400.1 ARA-2; GTP binding	493	6e-050

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	2			25%


11	4			50%


9	2			25%

Unigene Members	Member information