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Information for unigene UN15837
FASTA Sequence |
Unigene ID: UN15837 | Length: 1032 |
SSR | | GGACTCATCTCTCACACCAAAGCTTCTTCGCTTCGCTTGAACAATGGTGTTTGTGAAGCCATCAAAGTCGAATGCATACTTCAAGA
GGTACAAGTCAAGTTCAGGAGAAGAAGAGCTGGTAAGACCGATTACAGAGCAAGAATCCGTCTCATTAACCAAGACAAAAACAAGT
ACAACACACCCAAGTACCGTTTCGTTGTCAGGTTCACCAACAAAGACATTGTTGCTCAAATCGTGTCCGCAAGCATAGCCGGTGAC
ATTGTCAAGGCCTCTGCTTACGCACACGAGTTGCCTCAGTATGGACTCACTGTTGGTCTTACCAACTACGCTGCAGCTTACTGTAC
CGGCCTTCTTTTGGCTCGCCGTGTTCTCAAGATGTTGGAAATGGATGCCGAGTATGAGGGCAACGTTGAGGCCACTGGAGAAGACT
TTTCCGTGGAACCAACCGAGTCAAGGAGGCCTTTCCGTGCCCTTCTTGATATCCCCCACAGTGACAAGAGGTTTGCAGGTTTCAAC
AAAGAAAACAAACAGCTCGATGCTGAGACCCACAGGAACTACATCTTTGGTGGCCATGTCTCAAACTACATGAAGATGTTGAACGA
AGATGAGCCAGAGAAGTTTCAGACTCACTTCAGTCAGTACTTGAAGAAAGGAGTTGACGCTGAGAAGATGGAGGAGCTGTACAAGA
AGGTTCATGCAGCTATCCGTGCTGACCCCAACCCCAAGAAGACCGTGAAACCTGCCCCCAAGGCACACAAGAGGTACAACTTAAAG
AAGTTGACCTACGAGGAAAGGAAGAATAAGTTGATCGAGAGAGTCAAGGCATTGAACGGAGCAGCAGGTGGTGATGATGATGATGA
GGACGACGAAGAGTAAATCACCACAGCTTTTCGTTGCCTCGCAATGTTTAGCTGTTTACTTCTTAAGCTTATTATTGTCTCAGTTT
TTCTATCTTTCAGACCTAAACACTTGGTTTCTTTCACATTTCATTTGCGTTCGAGGATTTTGAATTTAAGGATACTTTTCTCTCAC
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GenBank top hits (Blast detail) | Score | e value |
NP_566767 60S ribosomal protein L5-1 [Arabidopsis thaliana] | 650 | 1e-065 |
AAM64753 ribosomal protein, putative [Arabidopsis thaliana] | 650 | 1e-065 |
NP_198790 60S ribosomal protein L5-2 [Arabidopsis thaliana] | 649 | 1e-065 |
XP_002870764 hypothetical protein ARALYDRAFT_916328 [Arabidopsis lyrata subsp. lyrata] | 649 | 1e-065 |
XP_002885727 hypothetical protein ARALYDRAFT_480054 [Arabidopsis lyrata subsp. lyrata] | 644 | 5e-065 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q8LBI1 60S ribosomal protein L5-1 | 650 | 5e-067 |
P49227 60S ribosomal protein L5-2 | 649 | 6e-067 |
Q6UNT2 60S ribosomal protein L5 | 612 | 1e-062 |
A2WXX3 60S ribosomal protein L5-1 | 573 | 4e-058 |
Q0JGY1 60S ribosomal protein L5-1 | 571 | 7e-058 |
TrEMBL top hits (Blast detail) | Score | e value |
B9DHP6 AT3G25520 protein (Fragment) | 626 | 5e-063 |
A9PFA8 Predicted protein | 623 | 1e-062 |
B9SFU0 Ribosomal protein L5, putative | 622 | 1e-062 |
B7FJX5 Putative uncharacterized protein | 612 | 2e-061 |
C6TL04 Putative uncharacterized protein | 609 | 4e-061 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT3G25520.1 ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); 5S rRNA binding / structural constituent of ribosome | 650 | 4e-068 |
AT5G39740.1 60S ribosomal protein L5 (RPL5B) | 649 | 6e-068 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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