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Information for unigene UN15847

FASTA Sequence
Unigene ID: UN15847Length: 1475 SSR 
CTTCAAGAAGGCTCTTAATTCGCTTGAAGAAGTAGAGCCACATGTAAAGACGGTAACCGAGTCGCAGCATATCGATTACCATTTCA
GCGGATTGGAAGATGACGATGAAAAAAAACAACGACGAAGATGATTCTGAGGTGAATGATGATGGAGAATTGAGTTTTGAATATAG
AGTGAATGACAAGGACCAAAATGCAGATTCTTCACCTAGTGCCTCCTCACAGTTGGGTCAATCAGATATCACATTTCCACTAGTTG
CAGGAGTAAAAACTGGGCAGGAAAATGAGGAAGCAAACTATGGGAGATCTCGTTCTTATAGGAGAGATGTTAGGATAGAGAGCCAG
TCAGCACCCCTGTTTGCTGAGAACCGGACAACTCCTCCTTCGGAGAAGCTTTTACGGATGCGATCATCTGTAACACGAAAATTCAG
CACTTATGCATTGCCAACACCTGTGGAATCAGCTAAAAGTCCCTCATCTGTTACAAGTCTAGGTAACAACAAGAGCATGGCTTCAT
CTAATCCTGCAAAGCCAATAGCAAAAAACATTTGGTATTCATCCCCACTGGAAACTCGTGGACCTGCAAAGGTTTCTTCCAGACCA
ATGACTTGCTTGAAAGAACAAGTTCTGAGAGAGAGTAACAAGAATACATCTTCTCGGTTGCCTCGGCCTTCGACAGATGGACTCTT
GTACTCTCGTATCGGATCACTCAAGAGGCGATCCTTTTCTGGTCCAATTACAAGTAAACCGTTGCCTAACAAGCCTCTCTCTTCAA
CGCCTCGTTTATACTCGGGTCCAATCCCAAGGAGTCCAGTCTCCAAGTTACCGAAAGTGTCAACATCGTCTCCAACTGCTTCCCCT
ACATTTGTCTCAACCCCGAAAATAAGCGAGCTCCATGAGCTTCCTAGACCACCACCACCACCACCAAGCAGCTCTGCTAAGTCTTC
GAGGGCATTTGGATATTCAGCACCTCTGGTTTCAAAGAGCCAATTGCTTAGTAAACCTATTATTTCAACTCCACCATCTCCTCTCC
CAATACCACCCGCAATCACTCGTAGCTTCTCTATACCTACTGGCAACCTTAGAGGAACAGAGTTAGATATGTCTAAGATGAGTCTG
GGTGCTAATAAGTTAAGCACTGCCTCCCCTCCTTTAACCCCGATGTCATTGGTCCATCCACCTCCATCTGCTATTACGGAGCACGC
AGAGCACCTAGCCATGTCCAAACAAGAGAGGAGGACTTGAAGGTGTAAGTTGTTTGTAGCTCTGCCTAAAAGCTTGTAGGAGGAGG
ACGACATTCCCTCTAGTTGCAGATATGTAAATATCTCTCCTGTTTTGTTCTGACAATGCTGAAGAAAAAAAGAAAGAGAGCCAAAC
AGTGACAAGGAATTGCCAAGTAATTTTGATTTTTTTTTATAATCATTCAGTGGTTTATAACAACATTACGATTATTTATTGAAGTC
ATTTATAACATCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_180907 hydroxyproline-rich glycoprotein-like protein [Arabidopsis thaliana]14469e-158
XP_002879455 hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata]14396e-157
AAB80666 unknown protein [Arabidopsis thaliana]14361e-156
XP_002275111 PREDICTED: hypothetical protein [Vitis vinifera]3007e-025
CBI21307 unnamed protein product [Vitis vinifera]2972e-024

Swiss-Prot top hits (Blast detail)Scoree value
O22799 Uncharacterized protein At2g3349014464e-159
P08640 Flocculation protein FLO111632e-010
Q17RH7 Putative protein TPRXL1302e-006

TrEMBL top hits (Blast detail)Scoree value
B9RFW5 Putative uncharacterized protein3831e-034
B9GZC0 Predicted protein2924e-024
B9N0W7 Predicted protein2853e-023
B9RH23 Putative uncharacterized protein2621e-020
B9GMQ5 Predicted protein2298e-017

Arabidopsis top hits (Blast detail)Scoree value
AT2G33490.1 hydroxyproline-rich glycoprotein family protein14463e-160
AT3G26910.1 hydroxyproline-rich glycoprotein family protein2842e-025
AT3G26910.2 hydroxyproline-rich glycoprotein family protein2842e-025
AT5G41100.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G26910.2); Has 1264 Blast hits to 964 proteins in 165 species: Archae - 2; Bacteria - 75; Metazoa - 445; Fungi - 228; Plants - 134; Viruses - 35; Other Eukaryotes - 345 (source: NCBI BLink).2062e-016
AT5G41100.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G26910.2); Has 1257 Blast hits to 957 proteins in 161 species: Archae - 2; Bacteria - 67; Metazoa - 448; Fungi - 227; Plants - 135; Viruses - 33; Other Eukaryotes - 345 (source: NCBI BLink).2062e-016

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  29%
 
102  29%
 
92  29%
 
61  14%

Unigene MembersMember information