RadishBase

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Information for unigene UN15855

FASTA Sequence

Unigene ID: UN15855	Length: 1293	SSR
CATGTTTTCTGCTTGTCTGCAAAACAATTTCATTAAGAAACTTCTCCAAATATGCATTGTAATATCCAGTCAAAGTTTTCTGAAAA AAAATCTCATGTTATGAACAGTACATGGATGTCTTCAATTCTGAAACACTGATATAAGAACACTATAAAGAGTGCGAAACCTGATG AGAACCCAAAAAGAACAAATCAATCCTCGTCTTCATCATCACTGCCATAGTTCTGGAACAAAGATGCCAACCCGGCGTTAGCCACA ACGTCACTCTTCTTCTCCTCTGGTTGTGCAGGAGCTGGAGTCGTAGAAGAAGTTGGTTGAGATTGCTTCTTGATGACTGTTATGTG AATGGATTTGAAGGGTTGCTTGCTGGTAGCTTGCTTCTTGGGCTGCTTCGGGTTATCTGCAGATGAATTAGTCAAAATATCTGTGG GGTTGCTTGGACTTTCTTCTGATGCCTTTCTCTTCTTTGAAAGATCTGAAGATGATGATCCTTCTTTCTTCTCCTTCTGAAAGCTG GGAATATCATCATCATCATCATCATCATCATCATCATCTTCATCGTCTTCATCTACAATTCTCCTAACAACTTCTTTCTGTTTACC AAATATCGACTTAATAACTGCTTCATCTTCTTCTTCTATTCGTTTTACCTTCTCAGCGCCAGTTCTTTGCAAGGCCTCCAGCATCG CATCTACGCTCACAGTAGCGTGTCTAGACTTCATTGATTTCATTTCATCAAGAGCGACTATAATGTCCATTTCCCTTTTGGAATCC AAGGTCCGGTTCTCCAAAGACTTCATAGCGTCCCCCATCTCCTCGGCATCTCTTTTCTGCTGTTCCTTATCAACCTCCTCGTCTTC AGCACGCCAGGGTTCGTAATTACGACTTGCCCCAGATTCCACAATATAATCAGAGTTCTGTGGATCCGTCTTCATAGTCAGCTCCG CAGAGCACTTGGTGCACTTGAAGTAGAATCTAAAGATTTGAATCCCCAGATATGTCTCGCCAATGACGTCTTCTTTACGGGAATTG AACTTGGTTCCCTTGTAGATATAGTTTCCGCAGGTACTGCACCGGACGCTCATGGGAAGCATCATACGCACCTTGATCTGCTGGTT CTTCGGTCGCCTGAGCCGTGGAAGCTTCGACGGATCGAAGTCCGGAGGGTAGTACTTGTTAAGCACCTTTCGTTCTCCCATCTCCT CCTCCTCTCTTTCCTTCTTCTTCCTCCGAACAAAATCGCAAGTGAAAAAAAAAGCAAAATTCTCGTTTTGATTTTAATCCTTTTGT TCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_173156 uncharacterized protein [Arabidopsis thaliana]	1512	2e-165
NP_001077550 uncharacterized protein [Arabidopsis thaliana]	1494	2e-163
XP_002890205 hypothetical protein ARALYDRAFT_471912 [Arabidopsis lyrata subsp. lyrata]	1475	3e-161
ACU21483 unknown [Glycine max]	1098	2e-117
XP_002518796 Coiled-coil domain-containing protein, putative [Ricinus communis]	1092	9e-117

Swiss-Prot top hits (Blast detail)	Score	e value
Q54WR5 Coiled-coil domain-containing protein 94 homolog	609	4e-062
Q9BW85 Coiled-coil domain-containing protein 94	588	1e-059
Q9D6J3 Coiled-coil domain-containing protein 94	579	1e-058
Q9P7C5 Cell cycle control protein cwf16	484	1e-047
P28320 Protein CWC16	213	3e-016

TrEMBL top hits (Blast detail)	Score	e value
Q9SHH1 At1g17130	1512	1e-165
A8MR03 Uncharacterized protein At1g17130.2	1494	1e-163
C6TI31 Putative uncharacterized protein	1098	1e-117
B9RY29 Coiled-coil domain-containing protein, putative	1092	6e-117
B7FI18 Putative uncharacterized protein	1070	2e-114

Arabidopsis top hits (Blast detail)	Score	e value
AT1G17130.1 cell cycle control protein-related	1520	7e-169
AT1G17130.2 cell cycle control protein-related	1503	7e-167
AT2G32050.1 cell cycle control protein-related	639	1e-066
AT3G43250.1 cell cycle control protein-related	610	2e-063
AT2G29430.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: cell cycle control protein-related (TAIR:AT1G17130.1).	240	2e-020

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	4			44%


8	2			22%


6	1			11%


10	2			22%

Unigene Members	Member information