RadishBase

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Information for unigene UN15871

FASTA Sequence

Unigene ID: UN15871	Length: 1116	SSR	SNP
CCGTCTTCTATCAAACGATACCAAACAAGAGATTGCAAAATTGAATATTCAAATGGTTATAGGTTTAGAGAGAAAAAAGAACCAAC ACTAATCGTATCCCTTCCACGTTCACCAACAATGGCATAAACAAAAAGAAACAAAACGAGGAAAATCCACGTTCATTCACATAACA TATTAAAAGATCTAACATAAAGCTTCAACAAACACCATTTCACAACACCCTTTTTCTTGCTATCTGACGAACTCCATCACCATTTT GTAAACCCTAATCTTTCTTCTTGTTCTTCAACGGGCCCATTGGGATCTTGCTCAACACCTTCTCGTCCAACACTGCATACTGCTTC TTGATCTCGATCATTGCTTTCTCACCTAACGGGTCGACCTTGTCTTCGTACTTGTCGTACACAAGAGGAACCGTGAAGAGTAGCAC AAGAGCTATGTATGCCAATGTCAAGAAATTGAACCAGCCGCCCATGATGGATAGAACCCACAAGCCGGCTATAGCACAGAGGAATT TCTTGAGATCCCGGCCAGAAGCAATCTCACGAAGAGAGGAGAGTCCACGGTTGATCTCGATTCTGAGCCCAGATGCGAGCTGAAGG ATAGGCTCCTCAGGGATATGAACTTCAGGTATCTTTGGCGGCGACTTGTTGATGAACATGGTTGCATTAGACCAAAGAAACAACAC AGCAAGCACAACAATCATCACGTGGCAAAGCAAAGTGAGAAGATGGTACTCCATCAACTCAAACAGAACCCACGCGGCTGTAGCAC CACCAAGCACACCACCAGACATCTTCTTGTCCTTCCACATGAATATATCCGCCGGCTTTCCACCGCCGAGAACCTTATGCACAGGC TTCTCCCTTCCGAACAAGCGGTAAACTTTCGATTTCACAGAAGACGGAGACTCCGGCTTCTTCTCCTTCTTCTTCTTCTTATCGTC CTCGTCGTCGGAGGATGAAGACGACGAAGAGGAATCGCCACCGTGGTGGATCTTCTCCGTTATCTTATCCATCAACGAGTCCCTCT CCACGATCTCCACAGCTGGCTCCGGCGCCGTCACAGATTCGTCGTGTTTGTGTTCCTCAGCCATCTCTTCTCTTCCCCGATTCG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAJ33905 unnamed protein product [Thellungiella halophila]	1298	9e-141
NP_194094 reticulon-like protein B1 [Arabidopsis thaliana]	1297	1e-140
ACC91263 reticulon family protein [Capsella rubella]	1291	6e-140
XP_002869770 VIRB2-interacting protein 1 [Arabidopsis lyrata subsp. lyrata]	1260	2e-136
NP_192861 reticulon-like protein B2 [Arabidopsis thaliana]	1141	1e-122

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SUR3 Reticulon-like protein B1	1302	1e-142
Q9SUT9 Reticulon-like protein B2	1165	1e-126
Q9FFS0 Reticulon-like protein B4	897	1e-095
O82352 Reticulon-like protein B5	854	1e-090
Q9SH59 Reticulon-like protein B3	831	5e-088

TrEMBL top hits (Blast detail)	Score	e value
B2WS91 Reticulon family protein	1291	4e-140
B9RCJ7 Putative uncharacterized protein	953	6e-101
B7FIA7 Putative uncharacterized protein	944	7e-100
A9PAK3 Predicted protein	905	2e-095
C6TGE9 Putative uncharacterized protein	895	3e-094

Arabidopsis top hits (Blast detail)	Score	e value
AT4G23630.1 BTI1 (VIRB2-INTERACTING PROTEIN 1)	1303	9e-144
AT4G11220.1 BTI2 (VIRB2-INTERACTING PROTEIN 2)	1166	7e-128
AT5G41600.1 BTI3 (VIRB2-INTERACTING PROTEIN 3)	898	8e-097
AT2G46170.1 reticulon family protein (RTNLB5)	854	1e-091
AT1G64090.1 reticulon family protein (RTNLB3)	822	5e-088

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	7			47%


9	2			13%


12	3			20%


7	3			20%

Unigene Members	Member information