Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN15879

FASTA Sequence
Unigene ID: UN15879Length: 870 SSR 
TTTAAATCTGGCTCCAAAAAAGATTTTATTTAGACTTGAAAATGAGTAAACATAAGAGTACAAAAGTTAGAAATAGATGAAGTTAG
CCTAATAATTAGTAGCTGTTGATGGGAAGAGCAGCCATGTGGTGTTGATCGACAACTTCGATAACTTTGTTTGCTATTGCGCTTGC
ATATATTGTTGATCCTTCATTTATCTTAGTGTTGAGCAAGAAACTATAATGCTCGCCAATCTGTCCCCCAGAGACATGGTGAAGAT
CCAGATGTAGTTGATCAAGCACTTTGGTGACAACCAACAAACAATTAATCTTCTTTTTCTGAACAACTTTGATTGTTACTTCATCA
TCAACGATCCTAACATCAACTTCTGTTACTTTTGATTTCCTTTGCAGCCATGAACATCTCAGCGAGTTGTTGCTTGAACACTGGTC
TATTACATCACTCTCAGTCTTCTTCTCCATGTTTTCACCATCATCATCATTGACAATATTACGATCATCCAAGTTGGTGTTGTTGT
TGTTGTCTACTTCATTGTTGTTCTTATGTCTCCCACCACATCTTTTCCTCTCAACCAAGTACTTAAGCTCACTCACTCTTCTTCGC
AACTCGTTAATGTAATCGATTCCATCTTGAAGAATGGATGCTCTATCTCCCTTGCTAGGGTTAGGAATGAGCAGTTTCAATGCCTC
GTACCGCTCATTCAAGTGACATCTTCTCTCACGCTCTGTCGTGAAAGGCTTGTTCTTTTGCTTTCCTCTTCTTTTACGCCTGATGT
TTTTGCTAAACTCGATGATTCCGCTATCAACTGATCATTGTTGTTCTCATCACCAACATTTTGCTGATCTCTTTGAGTATTAGCAT
CGGTCCAGAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_180679 transcription factor bHLH91 [Arabidopsis thaliana]10621e-113
CAD58593 putative bHLH transcription factor [Arabidopsis thaliana]10567e-113
XP_002879311 basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata]10388e-111
AAD20666 hypothetical protein [Arabidopsis thaliana]9421e-099
NP_180680 transcription factor bHLH10 [Arabidopsis thaliana]6623e-067

Swiss-Prot top hits (Blast detail)Scoree value
Q8GX46 Transcription factor bHLH9110626e-115
Q84TK1 Transcription factor bHLH106622e-068
Q9LND0 Transcription factor bHLH894292e-041
Q9FIP9 Transcription factor ATR21352e-007
Q9LNJ5 Transcription factor bHLH131333e-007

TrEMBL top hits (Blast detail)Scoree value
C0JP25 Putative basic helix-loop-helix protein BHLH144973e-048
B9T7Y5 Transcription factor ICE1, putative4032e-037
A5BKY1 Putative uncharacterized protein4006e-037
A9TZG7 Predicted protein3971e-036
B9IIJ6 Predicted protein3934e-036

Arabidopsis top hits (Blast detail)Scoree value
AT2G31210.1 basic helix-loop-helix (bHLH) family protein10634e-116
AT2G31220.1 basic helix-loop-helix (bHLH) family protein6631e-069
AT1G06170.1 basic helix-loop-helix (bHLH) family protein4291e-042
AT1G06170.2 basic helix-loop-helix (bHLH) family protein4291e-042
AT2G31215.1 basic helix-loop-helix (bHLH) family protein2687e-024

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  33%
 
121  33%
 
71  33%

Unigene MembersMember information