 |
Information for unigene UN15993
| FASTA Sequence |
| Unigene ID: UN15993 | Length: 1243 |
SSR | | GGCCATAGCTGAGCTCGACATCTACAAGTTCGAACCACCTGATTTACCCGAGAAGTCATGCTTAAGGACTGGAGATCTTAAGTGGT
ACTTCTTCTGTCCGAGGCTTAAGAAGTATCCCAACGGCGGTAAGGCAAACCGTTCTACTGAATCTGGTTACTGGAAGACCACAGGG
AAAGATAGAGATGTTACTTACAATGATGAGGTCGTTGGGAAAATCAGAACTCTGATTTTTCACTACGGGAAGACGCCTCGTGGGGA
ACGTACCGACTGGGTTATGCACGAGTACAGACTTGAAGACAGAGCACTGGTACAGAGGAATATTCCTCAGGATACTTATGTGATTT
GTAAACTCTTTAAGAAGAAAGGACTTGGACCAAGGCATGGATCTGAATATGGAGCTCCATTTAAGGATGAGGATTGGAGTGATGAG
GAAGATATAGAGAGTCTTGTAGCTATTCCTGATCCTGGTCCTAACAAAGTAACCAGTGTAGTTGCTTCGGCATCACGCTCGCATCC
TCCAGAGGATTGTATCACTAGAGTGATATCAGAATCTTGTGTCTCTGATGTACCGCAACTGACTGCCGCAGTGCTTCCACCTCTAG
CGAGTGATGTTGTAGCTCACACTCCCTTGTCTTCTTCTTCTTCTCCTCTTCTTGAGGTTCCTCACGCAGTACAAGATGACGATGAC
TTTTATTCTATGCTGGATCTCTTTGTTGTTGATAGCGACGAGTCTTTACGTCTGGACGGATTCAACAACCAGTATGAGGTGAGACA
TGAGACTGGAGTTCCTGTTGTGGATGAAGCTCCTGTTTGCTTAGAAGATGTCGATATGAGCTGGATGCAAGGCGATGAGCTATTCA
TAGGCATAGAGGAACTGATTGAGCCATCCACTCCTCCCGCTGCTCAGGCTGGTCATCCCGGTGCTTCATGAGTCTATACAGTCAGA
CTTAAAACCACTTTGGTATTCATTGCTGTTTTGAGGATCCGTGTTGCTTTGATGCCATGGAAACAGAGACAAAAAATTGTGAGGCT
TTAACCAGAATGTTTTTTTTATCGCAAACTTTAGTGTGCACAAAAAGACAGACAATGTCATGACTCAGTAGTAGTAGCTTTTTTTT
TTAAGCAAACACAGTAGTAGTAGCTTAACACCATGAGATGTTGAGCTAGCTTTTATGTTGTGTTTGCCTTAACTAGCATTCATCAT
CATCATCATCATCATCATCTATGTATCAGAAAAAATCAT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002866590 ANAC103 [Arabidopsis lyrata subsp. lyrata] | 1083 | 9e-116 |
| NP_201211 NAC domain containing protein 103 [Arabidopsis thaliana] | 1019 | 2e-108 |
| XP_002873395 hypothetical protein ARALYDRAFT_487745 [Arabidopsis lyrata subsp. lyrata] | 741 | 4e-076 |
| NP_196495 NAC domain containing protein 82 [Arabidopsis thaliana] | 733 | 3e-075 |
| XP_002274450 PREDICTED: hypothetical protein, partial [Vitis vinifera] | 596 | 3e-059 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q84K00 NAC domain-containing protein 78 | 477 | 7e-047 |
| Q7GCL7 NAC domain-containing protein 74 | 343 | 2e-031 |
| Q39013 NAC domain-containing protein 2 | 325 | 3e-029 |
| O49255 NAC domain-containing protein 29 | 324 | 4e-029 |
| Q93VY3 NAC domain-containing protein 72 | 313 | 7e-028 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FMJ1 Similarity to NAM | 1019 | 2e-108 |
| Q9FY82 AT5G09330 protein | 733 | 2e-075 |
| B9RU40 Transcription factor, putative | 566 | 5e-056 |
| Q9M4U3 NAC1 | 541 | 4e-053 |
| B9HEK0 NAC domain protein, IPR003441 | 536 | 2e-052 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G64060.1 anac103 (Arabidopsis NAC domain containing protein 103); transcription factor | 1019 | 9e-111 |
| AT5G09330.1 anac082 (Arabidopsis NAC domain containing protein 82); transcription factor | 733 | 1e-077 |
| AT5G09330.2 anac082 (Arabidopsis NAC domain containing protein 82); transcription factor | 733 | 1e-077 |
| AT5G09330.3 anac082 (Arabidopsis NAC domain containing protein 82); transcription factor | 733 | 1e-077 |
| AT5G09330.4 anac082 (Arabidopsis NAC domain containing protein 82); transcription factor | 733 | 1e-077 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
